Hb_003031_030

Information

Type -
Description -
Location Contig3031: 32631-47280
Sequence    

Annotation

kegg
ID rcu:RCOM_0906340
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25 2.7.11.14)
nr
ID KDP20817.1
description hypothetical protein JCGZ_21288 [Jatropha curcas]
swissprot
ID Q9M0X5
description Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=3 SV=1
trembl
ID A0A067JAM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21288 PE=4 SV=1
Gene Ontology
ID GO:0005622
description cysteine-rich receptor-like protein kinase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31976: 32926-33669 , PASA_asmbl_31977: 33949-34438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003031_030 0.0 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
2 Hb_001838_050 0.0792766452 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
3 Hb_004574_010 0.0849909616 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
4 Hb_000616_050 0.0939570746 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
5 Hb_002805_150 0.0959075306 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_012395_070 0.1037213882 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
7 Hb_012753_200 0.1094383618 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
8 Hb_000237_150 0.1098807899 - - Epoxide hydrolase 2 [Morus notabilis]
9 Hb_001514_210 0.1145782653 - - hypothetical protein VITISV_012133 [Vitis vinifera]
10 Hb_019229_020 0.1223896004 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_088916_010 0.1230817972 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
12 Hb_000649_030 0.1262417815 - - scab resistance family protein [Populus trichocarpa]
13 Hb_000852_050 0.1265170436 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
14 Hb_001221_480 0.1276919894 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_011970_040 0.1276935333 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003119_070 0.133308044 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
17 Hb_012019_020 0.1340854692 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
18 Hb_000010_200 0.1357010687 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_002150_010 0.136373588 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
20 Hb_003807_020 0.1364997536 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]

Gene co-expression network

sample Hb_003031_030 Hb_003031_030 Hb_001838_050 Hb_001838_050 Hb_003031_030--Hb_001838_050 Hb_004574_010 Hb_004574_010 Hb_003031_030--Hb_004574_010 Hb_000616_050 Hb_000616_050 Hb_003031_030--Hb_000616_050 Hb_002805_150 Hb_002805_150 Hb_003031_030--Hb_002805_150 Hb_012395_070 Hb_012395_070 Hb_003031_030--Hb_012395_070 Hb_012753_200 Hb_012753_200 Hb_003031_030--Hb_012753_200 Hb_001838_050--Hb_004574_010 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_004574_010--Hb_012395_070 Hb_004574_010--Hb_002805_150 Hb_000286_190 Hb_000286_190 Hb_004574_010--Hb_000286_190 Hb_004574_010--Hb_088916_010 Hb_000616_050--Hb_000237_150 Hb_019229_020 Hb_019229_020 Hb_000616_050--Hb_019229_020 Hb_000649_030 Hb_000649_030 Hb_000616_050--Hb_000649_030 Hb_000852_050 Hb_000852_050 Hb_000616_050--Hb_000852_050 Hb_002805_150--Hb_012753_200 Hb_002805_150--Hb_012395_070 Hb_003807_020 Hb_003807_020 Hb_002805_150--Hb_003807_020 Hb_000579_180 Hb_000579_180 Hb_002805_150--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_002805_150--Hb_001514_210 Hb_012395_070--Hb_012753_200 Hb_005797_030 Hb_005797_030 Hb_012395_070--Hb_005797_030 Hb_000265_010 Hb_000265_010 Hb_012395_070--Hb_000265_010 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_012753_200--Hb_000579_180 Hb_012753_200--Hb_003807_020 Hb_002007_140 Hb_002007_140 Hb_012753_200--Hb_002007_140 Hb_012753_200--Hb_001514_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127461 3.38336 0.51753 0.942509 0.039031 0.0166668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00671473 0.038786 6.49157 0.331866

CAGE analysis