Hb_000616_050

Information

Type -
Description -
Location Contig616: 79208-80335
Sequence    

Annotation

kegg
ID rcu:RCOM_0339130
description hypothetical protein
nr
ID XP_012079488.1
description PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12599 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_050 0.0 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
2 Hb_000237_150 0.0797104646 - - Epoxide hydrolase 2 [Morus notabilis]
3 Hb_019229_020 0.0832128416 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
4 Hb_003031_030 0.0939570746 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
5 Hb_000649_030 0.0946841884 - - scab resistance family protein [Populus trichocarpa]
6 Hb_001838_050 0.0956315677 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
7 Hb_000852_050 0.1073072891 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
8 Hb_002671_110 0.1076773007 - - PREDICTED: remorin-like [Jatropha curcas]
9 Hb_001638_110 0.1120893395 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001405_100 0.1123128241 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
11 Hb_001678_030 0.1183566309 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_000238_060 0.1188520241 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
13 Hb_002003_020 0.1191533364 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
14 Hb_002007_140 0.1206040425 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
15 Hb_003807_020 0.1217742181 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
16 Hb_001135_290 0.121940362 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
17 Hb_001221_480 0.1224820818 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_012395_070 0.124130997 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
19 Hb_002805_150 0.1250027224 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_088916_010 0.1266754516 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]

Gene co-expression network

sample Hb_000616_050 Hb_000616_050 Hb_000237_150 Hb_000237_150 Hb_000616_050--Hb_000237_150 Hb_019229_020 Hb_019229_020 Hb_000616_050--Hb_019229_020 Hb_003031_030 Hb_003031_030 Hb_000616_050--Hb_003031_030 Hb_000649_030 Hb_000649_030 Hb_000616_050--Hb_000649_030 Hb_001838_050 Hb_001838_050 Hb_000616_050--Hb_001838_050 Hb_000852_050 Hb_000852_050 Hb_000616_050--Hb_000852_050 Hb_000238_060 Hb_000238_060 Hb_000237_150--Hb_000238_060 Hb_000237_150--Hb_000852_050 Hb_001405_100 Hb_001405_100 Hb_000237_150--Hb_001405_100 Hb_000237_150--Hb_000649_030 Hb_002671_110 Hb_002671_110 Hb_000237_150--Hb_002671_110 Hb_001638_110 Hb_001638_110 Hb_019229_020--Hb_001638_110 Hb_001104_280 Hb_001104_280 Hb_019229_020--Hb_001104_280 Hb_019229_020--Hb_000649_030 Hb_000000_060 Hb_000000_060 Hb_019229_020--Hb_000000_060 Hb_019229_020--Hb_000237_150 Hb_003031_030--Hb_001838_050 Hb_004574_010 Hb_004574_010 Hb_003031_030--Hb_004574_010 Hb_002805_150 Hb_002805_150 Hb_003031_030--Hb_002805_150 Hb_012395_070 Hb_012395_070 Hb_003031_030--Hb_012395_070 Hb_012753_200 Hb_012753_200 Hb_003031_030--Hb_012753_200 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000649_030--Hb_000238_060 Hb_111582_010 Hb_111582_010 Hb_000649_030--Hb_111582_010 Hb_001838_050--Hb_004574_010 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_000852_050--Hb_000238_060 Hb_002150_010 Hb_002150_010 Hb_000852_050--Hb_002150_010 Hb_002391_350 Hb_002391_350 Hb_000852_050--Hb_002391_350 Hb_000852_050--Hb_001405_100 Hb_000852_050--Hb_001638_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0382406 8.60985 1.08311 3.07018 0.0191731 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131125 0.03438 0.0637449 16.0364 0.567161

CAGE analysis