Hb_004574_010

Information

Type -
Description -
Location Contig4574: 410-1615
Sequence    

Annotation

kegg
ID rcu:RCOM_0339650
description Nodulation receptor kinase precursor, putative (EC:2.7.11.30)
nr
ID XP_002533651.1
description Nodulation receptor kinase precursor, putative [Ricinus communis]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID B9T5Y2
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_0339650 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004574_010 0.0 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
2 Hb_001838_050 0.0791127785 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
3 Hb_003031_030 0.0849909616 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
4 Hb_012395_070 0.1010806749 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
5 Hb_002805_150 0.1074104134 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000286_190 0.1104717703 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
7 Hb_088916_010 0.1146684887 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
8 Hb_000010_200 0.1151214689 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_029508_030 0.1168238188 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
10 Hb_012753_200 0.1184343038 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
11 Hb_000920_360 0.1226616556 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
12 Hb_001693_020 0.1241410284 - - zinc finger protein, putative [Ricinus communis]
13 Hb_001514_210 0.128369275 - - hypothetical protein VITISV_012133 [Vitis vinifera]
14 Hb_000381_030 0.1287831413 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
15 Hb_000616_050 0.1289779181 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
16 Hb_005797_030 0.1320499136 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
17 Hb_002150_010 0.1332844045 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
18 Hb_000237_150 0.1341827773 - - Epoxide hydrolase 2 [Morus notabilis]
19 Hb_002007_230 0.1365358476 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
20 Hb_001331_040 0.137786916 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004574_010 Hb_004574_010 Hb_001838_050 Hb_001838_050 Hb_004574_010--Hb_001838_050 Hb_003031_030 Hb_003031_030 Hb_004574_010--Hb_003031_030 Hb_012395_070 Hb_012395_070 Hb_004574_010--Hb_012395_070 Hb_002805_150 Hb_002805_150 Hb_004574_010--Hb_002805_150 Hb_000286_190 Hb_000286_190 Hb_004574_010--Hb_000286_190 Hb_088916_010 Hb_088916_010 Hb_004574_010--Hb_088916_010 Hb_001838_050--Hb_003031_030 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_001838_050--Hb_088916_010 Hb_000616_050 Hb_000616_050 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_003031_030--Hb_000616_050 Hb_003031_030--Hb_002805_150 Hb_003031_030--Hb_012395_070 Hb_012753_200 Hb_012753_200 Hb_003031_030--Hb_012753_200 Hb_012395_070--Hb_002805_150 Hb_012395_070--Hb_012753_200 Hb_005797_030 Hb_005797_030 Hb_012395_070--Hb_005797_030 Hb_000265_010 Hb_000265_010 Hb_012395_070--Hb_000265_010 Hb_001104_280 Hb_001104_280 Hb_012395_070--Hb_001104_280 Hb_002805_150--Hb_012753_200 Hb_003807_020 Hb_003807_020 Hb_002805_150--Hb_003807_020 Hb_000579_180 Hb_000579_180 Hb_002805_150--Hb_000579_180 Hb_001514_210 Hb_001514_210 Hb_002805_150--Hb_001514_210 Hb_000920_360 Hb_000920_360 Hb_000286_190--Hb_000920_360 Hb_029508_030 Hb_029508_030 Hb_000286_190--Hb_029508_030 Hb_000286_190--Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_000286_190--Hb_001864_010 Hb_000608_450 Hb_000608_450 Hb_000286_190--Hb_000608_450 Hb_008140_060 Hb_008140_060 Hb_088916_010--Hb_008140_060 Hb_000740_130 Hb_000740_130 Hb_088916_010--Hb_000740_130 Hb_088916_010--Hb_000920_360 Hb_001105_200 Hb_001105_200 Hb_088916_010--Hb_001105_200 Hb_182021_010 Hb_182021_010 Hb_088916_010--Hb_182021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035317 1.8595 0.245384 0.394049 0 0.0185015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0590296 3.51984 0.32836

CAGE analysis