Hb_029508_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig29508: 26793-30823
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04880g
description POPTRDRAFT_551125; hypothetical protein
nr
ID XP_002302090.2
description hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
swissprot
ID O22759
description Protein indeterminate-domain 12 OS=Arabidopsis thaliana GN=IDD12 PE=2 SV=2
trembl
ID B9GSI6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04880g PE=4 SV=2
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30856: 27602-29919 , PASA_asmbl_30857: 30022-30860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029508_030 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
2 Hb_000286_190 0.0882426063 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
3 Hb_000221_170 0.0892324754 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
4 Hb_000920_360 0.0910587604 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
5 Hb_001864_010 0.0911165758 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001709_070 0.1081735073 - - carbohydrate binding protein, putative [Ricinus communis]
7 Hb_000876_050 0.1115761885 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
8 Hb_005797_030 0.1124905983 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
9 Hb_004574_010 0.1168238188 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_012395_070 0.1192008167 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
11 Hb_006938_010 0.1225912709 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
12 Hb_000556_200 0.1288889782 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
13 Hb_007894_260 0.1305862586 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_006569_110 0.1313309707 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000381_030 0.1324087717 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
16 Hb_000512_040 0.1324573927 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_003086_200 0.1343597649 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_002007_230 0.1359998845 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
19 Hb_001331_040 0.1370956708 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
20 Hb_004162_040 0.1402317798 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]

Gene co-expression network

sample Hb_029508_030 Hb_029508_030 Hb_000286_190 Hb_000286_190 Hb_029508_030--Hb_000286_190 Hb_000221_170 Hb_000221_170 Hb_029508_030--Hb_000221_170 Hb_000920_360 Hb_000920_360 Hb_029508_030--Hb_000920_360 Hb_001864_010 Hb_001864_010 Hb_029508_030--Hb_001864_010 Hb_001709_070 Hb_001709_070 Hb_029508_030--Hb_001709_070 Hb_000876_050 Hb_000876_050 Hb_029508_030--Hb_000876_050 Hb_000286_190--Hb_000920_360 Hb_005797_030 Hb_005797_030 Hb_000286_190--Hb_005797_030 Hb_000286_190--Hb_001864_010 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000608_450 Hb_000608_450 Hb_000286_190--Hb_000608_450 Hb_000221_170--Hb_000876_050 Hb_000221_170--Hb_001864_010 Hb_005489_160 Hb_005489_160 Hb_000221_170--Hb_005489_160 Hb_000221_170--Hb_001709_070 Hb_005333_100 Hb_005333_100 Hb_000221_170--Hb_005333_100 Hb_000920_360--Hb_005797_030 Hb_000920_360--Hb_000608_450 Hb_088916_010 Hb_088916_010 Hb_000920_360--Hb_088916_010 Hb_000920_360--Hb_001864_010 Hb_001864_010--Hb_005797_030 Hb_002007_230 Hb_002007_230 Hb_001864_010--Hb_002007_230 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020 Hb_004162_040 Hb_004162_040 Hb_001709_070--Hb_004162_040 Hb_124385_010 Hb_124385_010 Hb_001709_070--Hb_124385_010 Hb_001709_070--Hb_008503_020 Hb_001623_470 Hb_001623_470 Hb_001709_070--Hb_001623_470 Hb_000684_010 Hb_000684_010 Hb_000876_050--Hb_000684_010 Hb_000876_050--Hb_005333_100 Hb_000120_980 Hb_000120_980 Hb_000876_050--Hb_000120_980 Hb_005542_110 Hb_005542_110 Hb_000876_050--Hb_005542_110 Hb_010813_030 Hb_010813_030 Hb_000876_050--Hb_010813_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167416 19.0264 1.84561 1.77863 0.0826157 0.119373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 32.4395 5.1725

CAGE analysis