Hb_001709_070

Information

Type -
Description -
Location Contig1709: 153615-155612
Sequence    

Annotation

kegg
ID rcu:RCOM_0072320
description carbohydrate binding protein, putative (EC:2.7.11.22)
nr
ID XP_002531545.1
description carbohydrate binding protein, putative [Ricinus communis]
swissprot
ID Q9SZD5
description L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana GN=LECRK59 PE=2 SV=1
trembl
ID B9SZX6
description Carbohydrate binding protein, putative OS=Ricinus communis GN=RCOM_0072320 PE=3 SV=1
Gene Ontology
ID GO:0004672
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001709_070 0.0 - - carbohydrate binding protein, putative [Ricinus communis]
2 Hb_004162_040 0.0835420745 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
3 Hb_124385_010 0.0861221573 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
4 Hb_008503_020 0.0988429 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_000221_170 0.1060829774 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
6 Hb_029508_030 0.1081735073 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
7 Hb_001623_470 0.1274636232 - - ammonium transporter, putative [Ricinus communis]
8 Hb_001864_010 0.1313320406 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001489_030 0.1356688525 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
10 Hb_000556_200 0.1359003336 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
11 Hb_003086_200 0.1373606984 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_000203_060 0.1392246563 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
13 Hb_001596_040 0.140468229 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
14 Hb_000043_080 0.1426205702 - - lipid binding protein, putative [Ricinus communis]
15 Hb_000512_040 0.1452837188 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_001769_030 0.1465392468 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
17 Hb_003878_100 0.147531648 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
18 Hb_120268_010 0.1481964736 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
19 Hb_005797_030 0.1485118114 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
20 Hb_002171_070 0.1499075649 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]

Gene co-expression network

sample Hb_001709_070 Hb_001709_070 Hb_004162_040 Hb_004162_040 Hb_001709_070--Hb_004162_040 Hb_124385_010 Hb_124385_010 Hb_001709_070--Hb_124385_010 Hb_008503_020 Hb_008503_020 Hb_001709_070--Hb_008503_020 Hb_000221_170 Hb_000221_170 Hb_001709_070--Hb_000221_170 Hb_029508_030 Hb_029508_030 Hb_001709_070--Hb_029508_030 Hb_001623_470 Hb_001623_470 Hb_001709_070--Hb_001623_470 Hb_004162_040--Hb_124385_010 Hb_120268_010 Hb_120268_010 Hb_004162_040--Hb_120268_010 Hb_004162_040--Hb_008503_020 Hb_004162_040--Hb_000221_170 Hb_000203_060 Hb_000203_060 Hb_004162_040--Hb_000203_060 Hb_001856_060 Hb_001856_060 Hb_124385_010--Hb_001856_060 Hb_001013_040 Hb_001013_040 Hb_124385_010--Hb_001013_040 Hb_124385_010--Hb_029508_030 Hb_124385_010--Hb_008503_020 Hb_001489_030 Hb_001489_030 Hb_008503_020--Hb_001489_030 Hb_003086_200 Hb_003086_200 Hb_008503_020--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_008503_020--Hb_012053_030 Hb_001864_010 Hb_001864_010 Hb_008503_020--Hb_001864_010 Hb_008053_070 Hb_008053_070 Hb_008503_020--Hb_008053_070 Hb_000876_050 Hb_000876_050 Hb_000221_170--Hb_000876_050 Hb_000221_170--Hb_029508_030 Hb_000221_170--Hb_001864_010 Hb_005489_160 Hb_005489_160 Hb_000221_170--Hb_005489_160 Hb_005333_100 Hb_005333_100 Hb_000221_170--Hb_005333_100 Hb_000286_190 Hb_000286_190 Hb_029508_030--Hb_000286_190 Hb_000920_360 Hb_000920_360 Hb_029508_030--Hb_000920_360 Hb_029508_030--Hb_001864_010 Hb_029508_030--Hb_000876_050 Hb_001355_110 Hb_001355_110 Hb_001623_470--Hb_001355_110 Hb_001769_030 Hb_001769_030 Hb_001623_470--Hb_001769_030 Hb_000489_020 Hb_000489_020 Hb_001623_470--Hb_000489_020 Hb_001623_470--Hb_005333_100 Hb_001266_020 Hb_001266_020 Hb_001623_470--Hb_001266_020 Hb_000976_060 Hb_000976_060 Hb_001623_470--Hb_000976_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.878562 0.121614 0.0229303 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.21649 0.150274

CAGE analysis