Hb_005489_160

Information

Type -
Description -
Location Contig5489: 145330-148277
Sequence    

Annotation

kegg
ID rcu:RCOM_1679960
description Amine oxidase [copper-containing] precursor, putative
nr
ID XP_012087107.1
description PREDICTED: primary amine oxidase-like [Jatropha curcas]
swissprot
ID Q8H1H9
description Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1
trembl
ID A0A067K033
description Amine oxidase OS=Jatropha curcas GN=JCGZ_20761 PE=3 SV=1
Gene Ontology
ID GO:0005507
description primary amine oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48176: 145438-148300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_160 0.0 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
2 Hb_001104_280 0.0818017872 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
3 Hb_005797_030 0.09180314 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
4 Hb_151364_010 0.0969369538 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_000221_170 0.1043418615 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
6 Hb_001864_010 0.106982828 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002475_100 0.1115766026 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
8 Hb_005333_100 0.114685635 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012395_070 0.1159631117 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
10 Hb_000265_010 0.1181224432 - - amino acid transporter, putative [Ricinus communis]
11 Hb_002007_230 0.1189212643 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
12 Hb_001838_010 0.1189734525 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
13 Hb_000876_050 0.1258394479 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
14 Hb_000000_060 0.1317002608 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
15 Hb_003086_200 0.13181726 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
16 Hb_000120_980 0.1320401392 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
17 Hb_018563_040 0.1355838985 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_000976_060 0.1387086765 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_001454_160 0.1387375456 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
20 Hb_000920_360 0.1394178618 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005489_160 Hb_005489_160 Hb_001104_280 Hb_001104_280 Hb_005489_160--Hb_001104_280 Hb_005797_030 Hb_005797_030 Hb_005489_160--Hb_005797_030 Hb_151364_010 Hb_151364_010 Hb_005489_160--Hb_151364_010 Hb_000221_170 Hb_000221_170 Hb_005489_160--Hb_000221_170 Hb_001864_010 Hb_001864_010 Hb_005489_160--Hb_001864_010 Hb_002475_100 Hb_002475_100 Hb_005489_160--Hb_002475_100 Hb_000000_060 Hb_000000_060 Hb_001104_280--Hb_000000_060 Hb_001104_280--Hb_005797_030 Hb_019229_020 Hb_019229_020 Hb_001104_280--Hb_019229_020 Hb_012395_070 Hb_012395_070 Hb_001104_280--Hb_012395_070 Hb_002007_140 Hb_002007_140 Hb_001104_280--Hb_002007_140 Hb_005797_030--Hb_001864_010 Hb_002007_230 Hb_002007_230 Hb_005797_030--Hb_002007_230 Hb_000920_360 Hb_000920_360 Hb_005797_030--Hb_000920_360 Hb_003086_200 Hb_003086_200 Hb_005797_030--Hb_003086_200 Hb_000286_190 Hb_000286_190 Hb_005797_030--Hb_000286_190 Hb_008053_070 Hb_008053_070 Hb_151364_010--Hb_008053_070 Hb_000300_570 Hb_000300_570 Hb_151364_010--Hb_000300_570 Hb_012053_030 Hb_012053_030 Hb_151364_010--Hb_012053_030 Hb_151364_010--Hb_005797_030 Hb_151364_010--Hb_002007_230 Hb_000876_050 Hb_000876_050 Hb_000221_170--Hb_000876_050 Hb_029508_030 Hb_029508_030 Hb_000221_170--Hb_029508_030 Hb_000221_170--Hb_001864_010 Hb_001709_070 Hb_001709_070 Hb_000221_170--Hb_001709_070 Hb_005333_100 Hb_005333_100 Hb_000221_170--Hb_005333_100 Hb_001864_010--Hb_029508_030 Hb_001864_010--Hb_002007_230 Hb_001864_010--Hb_000286_190 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020 Hb_000120_980 Hb_000120_980 Hb_002475_100--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_002475_100--Hb_000589_180 Hb_002475_100--Hb_005333_100 Hb_001838_010 Hb_001838_010 Hb_002475_100--Hb_001838_010 Hb_000086_370 Hb_000086_370 Hb_002475_100--Hb_000086_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0474468 43.2145 0.845218 6.23429 0.105681 0.0074457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.017949 0.0564951 0 43.5442 5.94233

CAGE analysis