Hb_000300_570

Information

Type transcription factor
Description TF Family: MYB
Location Contig300: 537477-539417
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05300g
description POPTRDRAFT_571190; hypothetical protein
nr
ID XP_012070432.1
description PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
swissprot
ID Q38850
description Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1
trembl
ID A0A067KXJ9
description MYB family protein OS=Jatropha curcas GN=JCGZ_02708 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_570 0.0 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
2 Hb_012053_030 0.0649527062 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
3 Hb_000265_010 0.0736400381 - - amino acid transporter, putative [Ricinus communis]
4 Hb_003086_200 0.092693543 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_002007_230 0.0936278868 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
6 Hb_001489_030 0.0984597303 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
7 Hb_000185_060 0.0985979241 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
8 Hb_008053_070 0.103668394 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
9 Hb_151364_010 0.1049179535 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_008503_020 0.1058182827 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_000380_040 0.107619507 - - bel1 homeotic protein, putative [Ricinus communis]
12 Hb_000043_080 0.1200168621 - - lipid binding protein, putative [Ricinus communis]
13 Hb_005550_070 0.1209975594 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
14 Hb_000556_200 0.1235378793 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
15 Hb_000116_390 0.1245501363 - - Mlo protein [Hevea brasiliensis]
16 Hb_002917_030 0.1259887382 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
17 Hb_186298_010 0.1283435538 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_017987_040 0.1288223486 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
19 Hb_007666_040 0.1289978163 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
20 Hb_008616_020 0.1296249803 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000300_570 Hb_000300_570 Hb_012053_030 Hb_012053_030 Hb_000300_570--Hb_012053_030 Hb_000265_010 Hb_000265_010 Hb_000300_570--Hb_000265_010 Hb_003086_200 Hb_003086_200 Hb_000300_570--Hb_003086_200 Hb_002007_230 Hb_002007_230 Hb_000300_570--Hb_002007_230 Hb_001489_030 Hb_001489_030 Hb_000300_570--Hb_001489_030 Hb_000185_060 Hb_000185_060 Hb_000300_570--Hb_000185_060 Hb_012053_030--Hb_000265_010 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_012053_030--Hb_000185_060 Hb_012053_030--Hb_003086_200 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040 Hb_000265_010--Hb_003086_200 Hb_000265_010--Hb_002007_230 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_000265_010--Hb_001489_030 Hb_003086_200--Hb_002007_230 Hb_005797_030 Hb_005797_030 Hb_003086_200--Hb_005797_030 Hb_000043_080 Hb_000043_080 Hb_003086_200--Hb_000043_080 Hb_002007_230--Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_002007_230--Hb_001864_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_001489_030--Hb_012053_030 Hb_008616_020 Hb_008616_020 Hb_000185_060--Hb_008616_020 Hb_002677_010 Hb_002677_010 Hb_000185_060--Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_000185_060--Hb_032582_010 Hb_000185_060--Hb_008053_070 Hb_181092_010 Hb_181092_010 Hb_000185_060--Hb_181092_010 Hb_001376_040 Hb_001376_040 Hb_000185_060--Hb_001376_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.8357 0.211845 0.3934 0 0.0355754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0306901 0 5.72564 0.127257

CAGE analysis