Hb_000185_060

Information

Type -
Description -
Location Contig185: 89121-92604
Sequence    

Annotation

kegg
ID rcu:RCOM_1509600
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_012080008.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
swissprot
ID A2RVM0
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1
trembl
ID A0A067K4J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11433 PE=3 SV=1
Gene Ontology
ID GO:0016630
description short-chain dehydrogenase tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_060 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
2 Hb_008616_020 0.0587485943 - - unnamed protein product [Vitis vinifera]
3 Hb_002677_010 0.0682736734 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
4 Hb_032582_010 0.0768443091 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_008053_070 0.0778361407 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
6 Hb_181092_010 0.0827273065 - - unnamed protein product [Vitis vinifera]
7 Hb_001376_040 0.0837307744 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
8 Hb_000031_130 0.090651483 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
9 Hb_012053_030 0.0927241719 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
10 Hb_001269_020 0.0948719625 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
11 Hb_000300_570 0.0985979241 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
12 Hb_000116_390 0.1008247069 - - Mlo protein [Hevea brasiliensis]
13 Hb_005550_070 0.102477541 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
14 Hb_009083_080 0.1037249852 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000380_040 0.1039833564 - - bel1 homeotic protein, putative [Ricinus communis]
16 Hb_002986_110 0.107712959 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
17 Hb_000856_350 0.1119223367 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
18 Hb_013654_010 0.1140702677 - - unnamed protein product [Vitis vinifera]
19 Hb_004656_020 0.1142852351 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
20 Hb_000905_030 0.1160448093 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000185_060 Hb_000185_060 Hb_008616_020 Hb_008616_020 Hb_000185_060--Hb_008616_020 Hb_002677_010 Hb_002677_010 Hb_000185_060--Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_000185_060--Hb_032582_010 Hb_008053_070 Hb_008053_070 Hb_000185_060--Hb_008053_070 Hb_181092_010 Hb_181092_010 Hb_000185_060--Hb_181092_010 Hb_001376_040 Hb_001376_040 Hb_000185_060--Hb_001376_040 Hb_008616_020--Hb_001376_040 Hb_008616_020--Hb_002677_010 Hb_008616_020--Hb_032582_010 Hb_008616_020--Hb_008053_070 Hb_000905_030 Hb_000905_030 Hb_008616_020--Hb_000905_030 Hb_002677_010--Hb_032582_010 Hb_002677_010--Hb_181092_010 Hb_002986_110 Hb_002986_110 Hb_002677_010--Hb_002986_110 Hb_002677_010--Hb_008053_070 Hb_032582_010--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_032582_010--Hb_013654_010 Hb_032582_010--Hb_000905_030 Hb_008053_070--Hb_032582_010 Hb_012053_030 Hb_012053_030 Hb_008053_070--Hb_012053_030 Hb_008053_070--Hb_001376_040 Hb_000856_350 Hb_000856_350 Hb_181092_010--Hb_000856_350 Hb_156949_010 Hb_156949_010 Hb_181092_010--Hb_156949_010 Hb_181092_010--Hb_002986_110 Hb_181092_010--Hb_013654_010 Hb_000031_130 Hb_000031_130 Hb_001376_040--Hb_000031_130 Hb_001114_210 Hb_001114_210 Hb_001376_040--Hb_001114_210 Hb_032443_030 Hb_032443_030 Hb_001376_040--Hb_032443_030 Hb_004656_020 Hb_004656_020 Hb_001376_040--Hb_004656_020 Hb_005649_120 Hb_005649_120 Hb_001376_040--Hb_005649_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0789171 33.3365 0.533646 1.54675 0.056378 0.0792298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0269913 0.0505452 37.4294 0.0562656

CAGE analysis