Hb_032443_030

Information

Type -
Description -
Location Contig32443: 17190-19189
Sequence    

Annotation

kegg
ID tcc:TCM_038224
description Senescence-related gene 1
nr
ID XP_012091874.1
description PREDICTED: protein SRG1-like [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JBK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21657 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032443_030 0.0 - - PREDICTED: protein SRG1-like [Jatropha curcas]
2 Hb_002986_110 0.0423908095 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
3 Hb_008052_010 0.0463189522 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002285_010 0.0463251766 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000050_230 0.0463255559 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000391_030 0.0463268154 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_004332_060 0.046349758 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007313_020 0.0463619271 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_000036_020 0.046399288 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002985_020 0.0464013051 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_006124_020 0.0464369845 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
12 Hb_002553_150 0.0465200774 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
13 Hb_001568_100 0.0465554834 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
14 Hb_000496_040 0.0465677536 - - conserved hypothetical protein [Ricinus communis]
15 Hb_074336_010 0.046694159 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
16 Hb_001740_010 0.0466965279 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
17 Hb_001621_080 0.0467651833 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
18 Hb_013405_120 0.0468165316 - - -
19 Hb_003894_130 0.0468780249 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_008899_010 0.0469010446 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_032443_030 Hb_032443_030 Hb_002986_110 Hb_002986_110 Hb_032443_030--Hb_002986_110 Hb_008052_010 Hb_008052_010 Hb_032443_030--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_032443_030--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_032443_030--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_032443_030--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_032443_030--Hb_004332_060 Hb_013654_010 Hb_013654_010 Hb_002986_110--Hb_013654_010 Hb_002005_010 Hb_002005_010 Hb_002986_110--Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_002986_110--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_002986_110--Hb_008052_020 Hb_032215_070 Hb_032215_070 Hb_002986_110--Hb_032215_070 Hb_002553_150 Hb_002553_150 Hb_008052_010--Hb_002553_150 Hb_008052_010--Hb_002285_010 Hb_008052_010--Hb_000050_230 Hb_008052_010--Hb_000391_030 Hb_000496_040 Hb_000496_040 Hb_008052_010--Hb_000496_040 Hb_008052_010--Hb_004332_060 Hb_002285_010--Hb_000050_230 Hb_002285_010--Hb_000391_030 Hb_002285_010--Hb_004332_060 Hb_007313_020 Hb_007313_020 Hb_002285_010--Hb_007313_020 Hb_000036_020 Hb_000036_020 Hb_002285_010--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_002285_010--Hb_002985_020 Hb_000050_230--Hb_000391_030 Hb_000050_230--Hb_004332_060 Hb_000050_230--Hb_007313_020 Hb_000050_230--Hb_000036_020 Hb_000050_230--Hb_002985_020 Hb_000391_030--Hb_004332_060 Hb_000391_030--Hb_007313_020 Hb_000391_030--Hb_000036_020 Hb_000391_030--Hb_002985_020 Hb_004332_060--Hb_007313_020 Hb_004332_060--Hb_000036_020 Hb_004332_060--Hb_002985_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.93737 0 0.0392973 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.20611 0

CAGE analysis