Hb_002553_150

Information

Type -
Description -
Location Contig2553: 157239-158638
Sequence    

Annotation

kegg
ID cam:101502955
description early nodulin-75-like
nr
ID ADI68425.1
description Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
swissprot
ID Q40375
description Repetitive proline-rich cell wall protein 2 OS=Medicago truncatula GN=PRP2 PE=2 SV=1
trembl
ID D6ZNZ1
description Gram-positive signal peptide protein, YSIRK family OS=Streptococcus pneumoniae serotype A19 (strain TCH8431) GN=HMPREF0837_10197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_150 0.0 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
2 Hb_000496_040 0.0004607484 - - conserved hypothetical protein [Ricinus communis]
3 Hb_074336_010 0.001518298 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
4 Hb_008899_010 0.0029398892 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]
5 Hb_008052_010 0.0030430065 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002285_010 0.0063253628 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000050_230 0.0063355158 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000391_030 0.0063688152 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_004332_060 0.0068924746 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_007313_020 0.0071267084 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_000036_020 0.0077388776 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002985_020 0.0077685813 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_006124_020 0.0082545315 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
14 Hb_006869_020 0.0085731269 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_001568_100 0.009538476 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
16 Hb_002553_090 0.010606642 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
17 Hb_001740_010 0.0107286063 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
18 Hb_001621_080 0.0112322021 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
19 Hb_013405_120 0.0115856104 - - -
20 Hb_004032_070 0.0117365991 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]

Gene co-expression network

sample Hb_002553_150 Hb_002553_150 Hb_000496_040 Hb_000496_040 Hb_002553_150--Hb_000496_040 Hb_074336_010 Hb_074336_010 Hb_002553_150--Hb_074336_010 Hb_008899_010 Hb_008899_010 Hb_002553_150--Hb_008899_010 Hb_008052_010 Hb_008052_010 Hb_002553_150--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_002553_150--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_002553_150--Hb_000050_230 Hb_000496_040--Hb_074336_010 Hb_000496_040--Hb_008899_010 Hb_000496_040--Hb_008052_010 Hb_000496_040--Hb_002285_010 Hb_000496_040--Hb_000050_230 Hb_074336_010--Hb_008899_010 Hb_074336_010--Hb_008052_010 Hb_006869_020 Hb_006869_020 Hb_074336_010--Hb_006869_020 Hb_074336_010--Hb_002285_010 Hb_008899_010--Hb_006869_020 Hb_008899_010--Hb_008052_010 Hb_002553_090 Hb_002553_090 Hb_008899_010--Hb_002553_090 Hb_008052_010--Hb_002285_010 Hb_008052_010--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_008052_010--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_008052_010--Hb_004332_060 Hb_002285_010--Hb_000050_230 Hb_002285_010--Hb_000391_030 Hb_002285_010--Hb_004332_060 Hb_007313_020 Hb_007313_020 Hb_002285_010--Hb_007313_020 Hb_000036_020 Hb_000036_020 Hb_002285_010--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_002285_010--Hb_002985_020 Hb_000050_230--Hb_000391_030 Hb_000050_230--Hb_004332_060 Hb_000050_230--Hb_007313_020 Hb_000050_230--Hb_000036_020 Hb_000050_230--Hb_002985_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.148027 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123393 0

CAGE analysis