Hb_002553_090

Information

Type -
Description -
Location Contig2553: 79287-81636
Sequence    

Annotation

kegg
ID mdm:103433153
description uncharacterized LOC103433153
nr
ID XP_012065099.1
description PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26647: 80236-81976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_090 0.0 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
2 Hb_004032_070 0.001130007 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_006869_020 0.0020335807 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_008899_010 0.0076668374 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]
5 Hb_074336_010 0.0090883958 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
6 Hb_000496_040 0.0101459111 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002553_150 0.010606642 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
8 Hb_185340_010 0.0111333491 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_187024_010 0.0115916576 - - -
10 Hb_008052_010 0.0136494929 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_013204_010 0.0152328403 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
12 Hb_000352_250 0.0155671442 - - -
13 Hb_000029_250 0.0159853976 - - conserved hypothetical protein [Ricinus communis]
14 Hb_113631_010 0.0165005381 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_002285_010 0.016931604 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000050_230 0.0169417562 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000391_030 0.0169750527 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_005144_200 0.0169769935 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
19 Hb_004332_060 0.0174986654 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002400_130 0.0176381586 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]

Gene co-expression network

sample Hb_002553_090 Hb_002553_090 Hb_004032_070 Hb_004032_070 Hb_002553_090--Hb_004032_070 Hb_006869_020 Hb_006869_020 Hb_002553_090--Hb_006869_020 Hb_008899_010 Hb_008899_010 Hb_002553_090--Hb_008899_010 Hb_074336_010 Hb_074336_010 Hb_002553_090--Hb_074336_010 Hb_000496_040 Hb_000496_040 Hb_002553_090--Hb_000496_040 Hb_002553_150 Hb_002553_150 Hb_002553_090--Hb_002553_150 Hb_004032_070--Hb_006869_020 Hb_004032_070--Hb_008899_010 Hb_185340_010 Hb_185340_010 Hb_004032_070--Hb_185340_010 Hb_004032_070--Hb_074336_010 Hb_187024_010 Hb_187024_010 Hb_004032_070--Hb_187024_010 Hb_006869_020--Hb_008899_010 Hb_006869_020--Hb_074336_010 Hb_006869_020--Hb_000496_040 Hb_006869_020--Hb_002553_150 Hb_008899_010--Hb_074336_010 Hb_008899_010--Hb_000496_040 Hb_008899_010--Hb_002553_150 Hb_008052_010 Hb_008052_010 Hb_008899_010--Hb_008052_010 Hb_074336_010--Hb_000496_040 Hb_074336_010--Hb_002553_150 Hb_074336_010--Hb_008052_010 Hb_002285_010 Hb_002285_010 Hb_074336_010--Hb_002285_010 Hb_000496_040--Hb_002553_150 Hb_000496_040--Hb_008052_010 Hb_000496_040--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_000496_040--Hb_000050_230 Hb_002553_150--Hb_008052_010 Hb_002553_150--Hb_002285_010 Hb_002553_150--Hb_000050_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.298045 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.236276 0

CAGE analysis