Hb_000050_230

Information

Type -
Description -
Location Contig50: 424649-430175
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_230 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002285_010 1.01532e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000391_030 3.32999e-05 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_004332_060 0.0005569674 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007313_020 0.0007912051 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000036_020 0.0014033859 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002985_020 0.0014330903 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_006124_020 0.0019190509 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
9 Hb_001568_100 0.0032030281 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_008052_010 0.0032925316 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001740_010 0.0043931952 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
12 Hb_001621_080 0.0048968085 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
13 Hb_013405_120 0.0052502298 - - -
14 Hb_003894_130 0.0056517422 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_002400_120 0.0062781896 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_002553_150 0.0063355158 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
17 Hb_001611_030 0.0065774279 - - -
18 Hb_000496_040 0.0067962572 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027556_030 0.007113113 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
20 Hb_074336_010 0.0078537872 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000050_230 Hb_000050_230 Hb_002285_010 Hb_002285_010 Hb_000050_230--Hb_002285_010 Hb_000391_030 Hb_000391_030 Hb_000050_230--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_000050_230--Hb_004332_060 Hb_007313_020 Hb_007313_020 Hb_000050_230--Hb_007313_020 Hb_000036_020 Hb_000036_020 Hb_000050_230--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_000050_230--Hb_002985_020 Hb_002285_010--Hb_000391_030 Hb_002285_010--Hb_004332_060 Hb_002285_010--Hb_007313_020 Hb_002285_010--Hb_000036_020 Hb_002285_010--Hb_002985_020 Hb_000391_030--Hb_004332_060 Hb_000391_030--Hb_007313_020 Hb_000391_030--Hb_000036_020 Hb_000391_030--Hb_002985_020 Hb_004332_060--Hb_007313_020 Hb_004332_060--Hb_000036_020 Hb_004332_060--Hb_002985_020 Hb_007313_020--Hb_000036_020 Hb_007313_020--Hb_002985_020 Hb_000036_020--Hb_002985_020 Hb_006124_020 Hb_006124_020 Hb_000036_020--Hb_006124_020 Hb_002985_020--Hb_006124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00383198 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00329137 0

CAGE analysis