Hb_007313_020

Information

Type -
Description -
Location Contig7313: 17685-19625
Sequence    

Annotation

kegg
ID rcu:RCOM_1430050
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.10.2)
nr
ID XP_002512318.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID P93050
description Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=2 SV=1
trembl
ID B9REZ9
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_1430050 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable lrr receptor-like serine threonine-protein kinase rkf3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_020 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_004332_060 0.0002342378 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000036_020 0.0006121811 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002985_020 0.0006418854 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_000391_030 0.0007579052 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000050_230 0.0007912051 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_002285_010 0.0008013583 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_006124_020 0.0011278464 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
9 Hb_001568_100 0.0024118251 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_001740_010 0.0036019945 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
11 Hb_008052_010 0.004083733 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001621_080 0.0041056089 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
13 Hb_013405_120 0.0044590311 - - -
14 Hb_003894_130 0.0048605447 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_002400_120 0.005486994 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_001611_030 0.0057862333 - - -
17 Hb_027556_030 0.0063219203 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
18 Hb_002553_150 0.0071267084 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
19 Hb_051719_020 0.0072884954 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
20 Hb_000496_040 0.007587448 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007313_020 Hb_007313_020 Hb_004332_060 Hb_004332_060 Hb_007313_020--Hb_004332_060 Hb_000036_020 Hb_000036_020 Hb_007313_020--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_007313_020--Hb_002985_020 Hb_000391_030 Hb_000391_030 Hb_007313_020--Hb_000391_030 Hb_000050_230 Hb_000050_230 Hb_007313_020--Hb_000050_230 Hb_002285_010 Hb_002285_010 Hb_007313_020--Hb_002285_010 Hb_004332_060--Hb_000391_030 Hb_004332_060--Hb_000050_230 Hb_004332_060--Hb_002285_010 Hb_004332_060--Hb_000036_020 Hb_004332_060--Hb_002985_020 Hb_000036_020--Hb_002985_020 Hb_006124_020 Hb_006124_020 Hb_000036_020--Hb_006124_020 Hb_000036_020--Hb_000391_030 Hb_000036_020--Hb_000050_230 Hb_002985_020--Hb_006124_020 Hb_002985_020--Hb_000391_030 Hb_002985_020--Hb_000050_230 Hb_000391_030--Hb_000050_230 Hb_000391_030--Hb_002285_010 Hb_000050_230--Hb_002285_010 Hb_002285_010--Hb_000036_020 Hb_002285_010--Hb_002985_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.016948 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0146115 0

CAGE analysis