Hb_004332_060

Information

Type -
Description -
Location Contig4332: 28911-32361
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004332_060 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_007313_020 0.0002342378 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_000391_030 0.0005236675 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_000050_230 0.0005569674 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_002285_010 0.0005671206 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000036_020 0.0008464188 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002985_020 0.0008761232 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_006124_020 0.001362084 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
9 Hb_001568_100 0.0026460623 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
10 Hb_001740_010 0.0038362312 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
11 Hb_008052_010 0.0038494965 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001621_080 0.0043398452 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
13 Hb_013405_120 0.0046932672 - - -
14 Hb_003894_130 0.0050947804 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_002400_120 0.0057212292 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_001611_030 0.0060204683 - - -
17 Hb_027556_030 0.0065561547 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
18 Hb_002553_150 0.0068924746 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
19 Hb_000496_040 0.0073532148 - - conserved hypothetical protein [Ricinus communis]
20 Hb_051719_020 0.0075227287 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_004332_060 Hb_004332_060 Hb_007313_020 Hb_007313_020 Hb_004332_060--Hb_007313_020 Hb_000391_030 Hb_000391_030 Hb_004332_060--Hb_000391_030 Hb_000050_230 Hb_000050_230 Hb_004332_060--Hb_000050_230 Hb_002285_010 Hb_002285_010 Hb_004332_060--Hb_002285_010 Hb_000036_020 Hb_000036_020 Hb_004332_060--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_004332_060--Hb_002985_020 Hb_007313_020--Hb_000036_020 Hb_007313_020--Hb_002985_020 Hb_007313_020--Hb_000391_030 Hb_007313_020--Hb_000050_230 Hb_007313_020--Hb_002285_010 Hb_000391_030--Hb_000050_230 Hb_000391_030--Hb_002285_010 Hb_000391_030--Hb_000036_020 Hb_000391_030--Hb_002985_020 Hb_000050_230--Hb_002285_010 Hb_000050_230--Hb_000036_020 Hb_000050_230--Hb_002985_020 Hb_002285_010--Hb_000036_020 Hb_002285_010--Hb_002985_020 Hb_000036_020--Hb_002985_020 Hb_006124_020 Hb_006124_020 Hb_000036_020--Hb_006124_020 Hb_002985_020--Hb_006124_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00710314 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00611711 0

CAGE analysis