Hb_185340_010

Information

Type -
Description -
Location Contig185340: 1117-1464
Sequence    

Annotation

kegg
ID rcu:RCOM_1122780
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002525480.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q9FIC6
description Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1
trembl
ID B9SHL1
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1122780 PE=4 SV=1
Gene Ontology
ID GO:0016491
description rhicadhesin receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185340_010 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_187024_010 0.0004583298 - - -
3 Hb_013204_010 0.0040997413 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
4 Hb_000352_250 0.0044340716 - - -
5 Hb_000029_250 0.0048523592 - - conserved hypothetical protein [Ricinus communis]
6 Hb_113631_010 0.0053675439 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_005144_200 0.005844042 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
8 Hb_002400_130 0.0065052694 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
9 Hb_000984_090 0.0070331105 - - -
10 Hb_037949_010 0.0072014749 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
11 Hb_000107_010 0.0076332283 - - -
12 Hb_000000_350 0.0076838667 - - -
13 Hb_005181_100 0.0080903558 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
14 Hb_000696_280 0.0091464634 - - protein phosphatase-2c, putative [Ricinus communis]
15 Hb_007187_020 0.0094057221 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
16 Hb_005211_200 0.0095582936 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
17 Hb_004458_020 0.0096702334 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
18 Hb_068533_010 0.0097536317 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_004032_070 0.0100033871 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_005673_010 0.0103908985 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_185340_010 Hb_185340_010 Hb_187024_010 Hb_187024_010 Hb_185340_010--Hb_187024_010 Hb_013204_010 Hb_013204_010 Hb_185340_010--Hb_013204_010 Hb_000352_250 Hb_000352_250 Hb_185340_010--Hb_000352_250 Hb_000029_250 Hb_000029_250 Hb_185340_010--Hb_000029_250 Hb_113631_010 Hb_113631_010 Hb_185340_010--Hb_113631_010 Hb_005144_200 Hb_005144_200 Hb_185340_010--Hb_005144_200 Hb_187024_010--Hb_013204_010 Hb_187024_010--Hb_000352_250 Hb_187024_010--Hb_000029_250 Hb_187024_010--Hb_113631_010 Hb_187024_010--Hb_005144_200 Hb_013204_010--Hb_000352_250 Hb_013204_010--Hb_000029_250 Hb_013204_010--Hb_113631_010 Hb_013204_010--Hb_005144_200 Hb_002400_130 Hb_002400_130 Hb_013204_010--Hb_002400_130 Hb_000984_090 Hb_000984_090 Hb_013204_010--Hb_000984_090 Hb_000352_250--Hb_000029_250 Hb_000352_250--Hb_113631_010 Hb_000352_250--Hb_005144_200 Hb_000352_250--Hb_002400_130 Hb_000352_250--Hb_000984_090 Hb_000029_250--Hb_113631_010 Hb_000029_250--Hb_005144_200 Hb_000029_250--Hb_002400_130 Hb_000029_250--Hb_000984_090 Hb_113631_010--Hb_005144_200 Hb_113631_010--Hb_002400_130 Hb_113631_010--Hb_000984_090 Hb_005144_200--Hb_002400_130 Hb_005144_200--Hb_000984_090 Hb_037949_010 Hb_037949_010 Hb_005144_200--Hb_037949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.96678 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.47887 0

CAGE analysis