Hb_013204_010

Information

Type -
Description -
Location Contig13204: 24038-24538
Sequence    

Annotation

kegg
ID cic:CICLE_v10006597mg
description hypothetical protein
nr
ID XP_006421689.1
description hypothetical protein CICLE_v10006597mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U6Q5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006597mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10006597mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013204_010 0.0 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
2 Hb_000352_250 0.0003343325 - - -
3 Hb_000029_250 0.0007526233 - - conserved hypothetical protein [Ricinus communis]
4 Hb_113631_010 0.0012678127 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_005144_200 0.0017443158 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
6 Hb_002400_130 0.0024055514 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
7 Hb_000984_090 0.0029333999 - - -
8 Hb_037949_010 0.0031017668 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
9 Hb_000107_010 0.0035335272 - - -
10 Hb_000000_350 0.0035841664 - - -
11 Hb_187024_010 0.003641414 - - -
12 Hb_005181_100 0.0039906626 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
13 Hb_185340_010 0.0040997413 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_000696_280 0.0050467908 - - protein phosphatase-2c, putative [Ricinus communis]
15 Hb_007187_020 0.0053060551 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
16 Hb_005211_200 0.0054586299 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
17 Hb_004458_020 0.0055705723 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
18 Hb_068533_010 0.0056539725 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_005673_010 0.0062912545 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_030602_030 0.0064225808 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_013204_010 Hb_013204_010 Hb_000352_250 Hb_000352_250 Hb_013204_010--Hb_000352_250 Hb_000029_250 Hb_000029_250 Hb_013204_010--Hb_000029_250 Hb_113631_010 Hb_113631_010 Hb_013204_010--Hb_113631_010 Hb_005144_200 Hb_005144_200 Hb_013204_010--Hb_005144_200 Hb_002400_130 Hb_002400_130 Hb_013204_010--Hb_002400_130 Hb_000984_090 Hb_000984_090 Hb_013204_010--Hb_000984_090 Hb_000352_250--Hb_000029_250 Hb_000352_250--Hb_113631_010 Hb_000352_250--Hb_005144_200 Hb_000352_250--Hb_002400_130 Hb_000352_250--Hb_000984_090 Hb_000029_250--Hb_113631_010 Hb_000029_250--Hb_005144_200 Hb_000029_250--Hb_002400_130 Hb_000029_250--Hb_000984_090 Hb_113631_010--Hb_005144_200 Hb_113631_010--Hb_002400_130 Hb_113631_010--Hb_000984_090 Hb_005144_200--Hb_002400_130 Hb_005144_200--Hb_000984_090 Hb_037949_010 Hb_037949_010 Hb_005144_200--Hb_037949_010 Hb_002400_130--Hb_000984_090 Hb_002400_130--Hb_037949_010 Hb_000107_010 Hb_000107_010 Hb_002400_130--Hb_000107_010 Hb_000000_350 Hb_000000_350 Hb_002400_130--Hb_000000_350 Hb_000984_090--Hb_037949_010 Hb_000984_090--Hb_000107_010 Hb_000984_090--Hb_000000_350 Hb_005181_100 Hb_005181_100 Hb_000984_090--Hb_005181_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0592377 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0436813 0

CAGE analysis