Hb_000107_010

Information

Type -
Description -
Location Contig107: 12461-14044
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_010 0.0 - - -
2 Hb_000000_350 5.06395e-05 - - -
3 Hb_037949_010 0.0004317621 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
4 Hb_005181_100 0.0004571378 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
5 Hb_000984_090 0.0006001296 - - -
6 Hb_002400_130 0.0011279793 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
7 Hb_000696_280 0.0015132735 - - protein phosphatase-2c, putative [Ricinus communis]
8 Hb_007187_020 0.00177254 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
9 Hb_005144_200 0.0017892154 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
10 Hb_005211_200 0.0019251163 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_004458_020 0.0020370597 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
12 Hb_068533_010 0.0021204608 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_113631_010 0.0022657182 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_005673_010 0.0027577497 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_000029_250 0.0027809065 - - conserved hypothetical protein [Ricinus communis]
16 Hb_030602_030 0.0028890776 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_007627_020 0.0029350879 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000352_250 0.003199196 - - -
19 Hb_013204_010 0.0035335272 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
20 Hb_187024_010 0.0071749077 - - -

Gene co-expression network

sample Hb_000107_010 Hb_000107_010 Hb_000000_350 Hb_000000_350 Hb_000107_010--Hb_000000_350 Hb_037949_010 Hb_037949_010 Hb_000107_010--Hb_037949_010 Hb_005181_100 Hb_005181_100 Hb_000107_010--Hb_005181_100 Hb_000984_090 Hb_000984_090 Hb_000107_010--Hb_000984_090 Hb_002400_130 Hb_002400_130 Hb_000107_010--Hb_002400_130 Hb_000696_280 Hb_000696_280 Hb_000107_010--Hb_000696_280 Hb_000000_350--Hb_005181_100 Hb_000000_350--Hb_037949_010 Hb_000000_350--Hb_000984_090 Hb_000000_350--Hb_002400_130 Hb_000000_350--Hb_000696_280 Hb_037949_010--Hb_000984_090 Hb_037949_010--Hb_002400_130 Hb_037949_010--Hb_005181_100 Hb_005144_200 Hb_005144_200 Hb_037949_010--Hb_005144_200 Hb_005181_100--Hb_000696_280 Hb_005181_100--Hb_000984_090 Hb_007187_020 Hb_007187_020 Hb_005181_100--Hb_007187_020 Hb_000984_090--Hb_002400_130 Hb_000984_090--Hb_005144_200 Hb_002400_130--Hb_005144_200 Hb_113631_010 Hb_113631_010 Hb_002400_130--Hb_113631_010 Hb_000696_280--Hb_007187_020 Hb_005211_200 Hb_005211_200 Hb_000696_280--Hb_005211_200 Hb_004458_020 Hb_004458_020 Hb_000696_280--Hb_004458_020 Hb_068533_010 Hb_068533_010 Hb_000696_280--Hb_068533_010 Hb_005673_010 Hb_005673_010 Hb_000696_280--Hb_005673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0293728 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0212974 0

CAGE analysis