Hb_005181_100

Information

Type -
Description -
Location Contig5181: 45781-47070
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15550g
description POPTRDRAFT_769830; hypothetical protein
nr
ID XP_002316043.1
description hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID B9HX20
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15550g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_100 0.0 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
2 Hb_000000_350 0.0004064983 - - -
3 Hb_000107_010 0.0004571378 - - -
4 Hb_037949_010 0.0008888998 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
5 Hb_000696_280 0.001056136 - - protein phosphatase-2c, putative [Ricinus communis]
6 Hb_000984_090 0.0010572672 - - -
7 Hb_007187_020 0.0013154027 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
8 Hb_005211_200 0.001467979 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_004458_020 0.0015799225 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
10 Hb_002400_130 0.0015851167 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
11 Hb_068533_010 0.0016633236 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_005144_200 0.0022463524 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
13 Hb_005673_010 0.002300613 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_030602_030 0.002431941 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_007627_020 0.0024779513 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_113631_010 0.0027228549 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000029_250 0.0032380428 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000352_250 0.0036563318 - - -
19 Hb_013204_010 0.0039906626 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
20 Hb_187024_010 0.0076320363 - - -

Gene co-expression network

sample Hb_005181_100 Hb_005181_100 Hb_000000_350 Hb_000000_350 Hb_005181_100--Hb_000000_350 Hb_000107_010 Hb_000107_010 Hb_005181_100--Hb_000107_010 Hb_037949_010 Hb_037949_010 Hb_005181_100--Hb_037949_010 Hb_000696_280 Hb_000696_280 Hb_005181_100--Hb_000696_280 Hb_000984_090 Hb_000984_090 Hb_005181_100--Hb_000984_090 Hb_007187_020 Hb_007187_020 Hb_005181_100--Hb_007187_020 Hb_000000_350--Hb_000107_010 Hb_000000_350--Hb_037949_010 Hb_000000_350--Hb_000984_090 Hb_002400_130 Hb_002400_130 Hb_000000_350--Hb_002400_130 Hb_000000_350--Hb_000696_280 Hb_000107_010--Hb_037949_010 Hb_000107_010--Hb_000984_090 Hb_000107_010--Hb_002400_130 Hb_000107_010--Hb_000696_280 Hb_037949_010--Hb_000984_090 Hb_037949_010--Hb_002400_130 Hb_005144_200 Hb_005144_200 Hb_037949_010--Hb_005144_200 Hb_000696_280--Hb_007187_020 Hb_005211_200 Hb_005211_200 Hb_000696_280--Hb_005211_200 Hb_004458_020 Hb_004458_020 Hb_000696_280--Hb_004458_020 Hb_068533_010 Hb_068533_010 Hb_000696_280--Hb_068533_010 Hb_005673_010 Hb_005673_010 Hb_000696_280--Hb_005673_010 Hb_000984_090--Hb_002400_130 Hb_000984_090--Hb_005144_200 Hb_007187_020--Hb_005211_200 Hb_007187_020--Hb_004458_020 Hb_007187_020--Hb_068533_010 Hb_007187_020--Hb_005673_010 Hb_030602_030 Hb_030602_030 Hb_007187_020--Hb_030602_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0254843 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0184377 0

CAGE analysis