Hb_004458_020

Information

Type -
Description -
Location Contig4458: 69400-71996
Sequence    

Annotation

kegg
ID mdm:103412510
description uncharacterized LOC103412510
nr
ID ABA99022.2
description retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID Q2QQ28
description Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g32440 PE=4 SV=2
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004458_020 0.0 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
2 Hb_068533_010 8.34012e-05 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_005211_200 0.0001119436 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_007187_020 0.0002645201 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
5 Hb_000696_280 0.0005237868 - - protein phosphatase-2c, putative [Ricinus communis]
6 Hb_005673_010 0.0007206914 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_030602_030 0.0008520197 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007627_020 0.0008980301 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_005181_100 0.0015799225 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
10 Hb_000000_350 0.0019864204 - - -
11 Hb_000107_010 0.0020370597 - - -
12 Hb_037949_010 0.0024688211 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
13 Hb_000984_090 0.0026371881 - - -
14 Hb_002400_130 0.0031650364 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
15 Hb_005144_200 0.00382627 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
16 Hb_113631_010 0.0043027707 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000029_250 0.0048179563 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000352_250 0.0052362433 - - -
19 Hb_013204_010 0.0055705723 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
20 Hb_187024_010 0.0092119184 - - -

Gene co-expression network

sample Hb_004458_020 Hb_004458_020 Hb_068533_010 Hb_068533_010 Hb_004458_020--Hb_068533_010 Hb_005211_200 Hb_005211_200 Hb_004458_020--Hb_005211_200 Hb_007187_020 Hb_007187_020 Hb_004458_020--Hb_007187_020 Hb_000696_280 Hb_000696_280 Hb_004458_020--Hb_000696_280 Hb_005673_010 Hb_005673_010 Hb_004458_020--Hb_005673_010 Hb_030602_030 Hb_030602_030 Hb_004458_020--Hb_030602_030 Hb_068533_010--Hb_005211_200 Hb_068533_010--Hb_007187_020 Hb_068533_010--Hb_000696_280 Hb_068533_010--Hb_005673_010 Hb_068533_010--Hb_030602_030 Hb_005211_200--Hb_007187_020 Hb_005211_200--Hb_000696_280 Hb_005211_200--Hb_005673_010 Hb_005211_200--Hb_030602_030 Hb_007187_020--Hb_000696_280 Hb_007187_020--Hb_005673_010 Hb_007187_020--Hb_030602_030 Hb_005181_100 Hb_005181_100 Hb_000696_280--Hb_005181_100 Hb_000696_280--Hb_005673_010 Hb_005673_010--Hb_030602_030 Hb_007627_020 Hb_007627_020 Hb_005673_010--Hb_007627_020 Hb_030602_030--Hb_007627_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0119586 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00858696 0

CAGE analysis