Hb_000696_280

Information

Type -
Description -
Location Contig696: 192474-194502
Sequence    

Annotation

kegg
ID rcu:RCOM_0849360
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_002526696.1
description protein phosphatase-2c, putative [Ricinus communis]
swissprot
ID Q6NKS1
description Probable protein phosphatase 2C 65 OS=Arabidopsis thaliana GN=At5g01700 PE=2 SV=1
trembl
ID B9SL27
description Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_0849360 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 65

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_280 0.0 - - protein phosphatase-2c, putative [Ricinus communis]
2 Hb_007187_020 0.0002592668 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
3 Hb_005211_200 0.0004118432 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_004458_020 0.0005237868 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
5 Hb_068533_010 0.000607188 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_005181_100 0.001056136 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
7 Hb_005673_010 0.0012444781 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_030602_030 0.0013758063 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_007627_020 0.0014218167 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000000_350 0.0014626341 - - -
11 Hb_000107_010 0.0015132735 - - -
12 Hb_037949_010 0.0019450351 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
13 Hb_000984_090 0.0021134024 - - -
14 Hb_002400_130 0.0026412511 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
15 Hb_005144_200 0.0033024856 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
16 Hb_113631_010 0.0037789869 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000029_250 0.0042941734 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000352_250 0.0047124612 - - -
19 Hb_013204_010 0.0050467908 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
20 Hb_187024_010 0.0086881469 - - -

Gene co-expression network

sample Hb_000696_280 Hb_000696_280 Hb_007187_020 Hb_007187_020 Hb_000696_280--Hb_007187_020 Hb_005211_200 Hb_005211_200 Hb_000696_280--Hb_005211_200 Hb_004458_020 Hb_004458_020 Hb_000696_280--Hb_004458_020 Hb_068533_010 Hb_068533_010 Hb_000696_280--Hb_068533_010 Hb_005181_100 Hb_005181_100 Hb_000696_280--Hb_005181_100 Hb_005673_010 Hb_005673_010 Hb_000696_280--Hb_005673_010 Hb_007187_020--Hb_005211_200 Hb_007187_020--Hb_004458_020 Hb_007187_020--Hb_068533_010 Hb_007187_020--Hb_005673_010 Hb_030602_030 Hb_030602_030 Hb_007187_020--Hb_030602_030 Hb_005211_200--Hb_004458_020 Hb_005211_200--Hb_068533_010 Hb_005211_200--Hb_005673_010 Hb_005211_200--Hb_030602_030 Hb_004458_020--Hb_068533_010 Hb_004458_020--Hb_005673_010 Hb_004458_020--Hb_030602_030 Hb_068533_010--Hb_005673_010 Hb_068533_010--Hb_030602_030 Hb_000000_350 Hb_000000_350 Hb_005181_100--Hb_000000_350 Hb_000107_010 Hb_000107_010 Hb_005181_100--Hb_000107_010 Hb_037949_010 Hb_037949_010 Hb_005181_100--Hb_037949_010 Hb_000984_090 Hb_000984_090 Hb_005181_100--Hb_000984_090 Hb_005181_100--Hb_007187_020 Hb_005673_010--Hb_030602_030 Hb_007627_020 Hb_007627_020 Hb_005673_010--Hb_007627_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0329201 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0236977 0

CAGE analysis