Hb_000984_090

Information

Type -
Description -
Location Contig984: 118224-118788
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_090 0.0 - - -
2 Hb_037949_010 0.0001683675 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
3 Hb_002400_130 0.0005278498 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
4 Hb_000107_010 0.0006001296 - - -
5 Hb_000000_350 0.000650769 - - -
6 Hb_005181_100 0.0010572672 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
7 Hb_005144_200 0.0011890863 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
8 Hb_113631_010 0.0016655894 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_000696_280 0.0021134024 - - protein phosphatase-2c, putative [Ricinus communis]
10 Hb_000029_250 0.0021807783 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007187_020 0.0023726687 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
12 Hb_005211_200 0.0025252448 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_000352_250 0.0025990683 - - -
14 Hb_004458_020 0.0026371881 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
15 Hb_068533_010 0.0027205891 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_013204_010 0.0029333999 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
17 Hb_005673_010 0.0033578772 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_030602_030 0.0034892049 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007627_020 0.0035352152 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_187024_010 0.0065747884 - - -

Gene co-expression network

sample Hb_000984_090 Hb_000984_090 Hb_037949_010 Hb_037949_010 Hb_000984_090--Hb_037949_010 Hb_002400_130 Hb_002400_130 Hb_000984_090--Hb_002400_130 Hb_000107_010 Hb_000107_010 Hb_000984_090--Hb_000107_010 Hb_000000_350 Hb_000000_350 Hb_000984_090--Hb_000000_350 Hb_005181_100 Hb_005181_100 Hb_000984_090--Hb_005181_100 Hb_005144_200 Hb_005144_200 Hb_000984_090--Hb_005144_200 Hb_037949_010--Hb_000107_010 Hb_037949_010--Hb_000000_350 Hb_037949_010--Hb_002400_130 Hb_037949_010--Hb_005181_100 Hb_037949_010--Hb_005144_200 Hb_002400_130--Hb_005144_200 Hb_002400_130--Hb_000107_010 Hb_113631_010 Hb_113631_010 Hb_002400_130--Hb_113631_010 Hb_002400_130--Hb_000000_350 Hb_000107_010--Hb_000000_350 Hb_000107_010--Hb_005181_100 Hb_000696_280 Hb_000696_280 Hb_000107_010--Hb_000696_280 Hb_000000_350--Hb_005181_100 Hb_000000_350--Hb_000696_280 Hb_005181_100--Hb_000696_280 Hb_007187_020 Hb_007187_020 Hb_005181_100--Hb_007187_020 Hb_005144_200--Hb_113631_010 Hb_000029_250 Hb_000029_250 Hb_005144_200--Hb_000029_250 Hb_000352_250 Hb_000352_250 Hb_005144_200--Hb_000352_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.384685 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.279724 0

CAGE analysis