Hb_000352_250

Information

Type -
Description -
Location Contig352: 219661-221228
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36588: 222191-224012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_250 0.0 - - -
2 Hb_013204_010 0.0003343325 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
3 Hb_000029_250 0.0004182909 - - conserved hypothetical protein [Ricinus communis]
4 Hb_113631_010 0.0009334803 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_005144_200 0.0014099836 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
6 Hb_002400_130 0.0020712195 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
7 Hb_000984_090 0.0025990683 - - -
8 Hb_037949_010 0.0027674353 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
9 Hb_000107_010 0.003199196 - - -
10 Hb_000000_350 0.0032498353 - - -
11 Hb_005181_100 0.0036563318 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
12 Hb_187024_010 0.0039757447 - - -
13 Hb_185340_010 0.0044340716 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_000696_280 0.0047124612 - - protein phosphatase-2c, putative [Ricinus communis]
15 Hb_007187_020 0.0049717258 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
16 Hb_005211_200 0.0051243008 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
17 Hb_004458_020 0.0052362433 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
18 Hb_068533_010 0.0053196436 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_005673_010 0.0059569266 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_030602_030 0.0060882531 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000352_250 Hb_000352_250 Hb_013204_010 Hb_013204_010 Hb_000352_250--Hb_013204_010 Hb_000029_250 Hb_000029_250 Hb_000352_250--Hb_000029_250 Hb_113631_010 Hb_113631_010 Hb_000352_250--Hb_113631_010 Hb_005144_200 Hb_005144_200 Hb_000352_250--Hb_005144_200 Hb_002400_130 Hb_002400_130 Hb_000352_250--Hb_002400_130 Hb_000984_090 Hb_000984_090 Hb_000352_250--Hb_000984_090 Hb_013204_010--Hb_000029_250 Hb_013204_010--Hb_113631_010 Hb_013204_010--Hb_005144_200 Hb_013204_010--Hb_002400_130 Hb_013204_010--Hb_000984_090 Hb_000029_250--Hb_113631_010 Hb_000029_250--Hb_005144_200 Hb_000029_250--Hb_002400_130 Hb_000029_250--Hb_000984_090 Hb_113631_010--Hb_005144_200 Hb_113631_010--Hb_002400_130 Hb_113631_010--Hb_000984_090 Hb_005144_200--Hb_002400_130 Hb_005144_200--Hb_000984_090 Hb_037949_010 Hb_037949_010 Hb_005144_200--Hb_037949_010 Hb_002400_130--Hb_000984_090 Hb_002400_130--Hb_037949_010 Hb_000107_010 Hb_000107_010 Hb_002400_130--Hb_000107_010 Hb_000000_350 Hb_000000_350 Hb_002400_130--Hb_000000_350 Hb_000984_090--Hb_037949_010 Hb_000984_090--Hb_000107_010 Hb_000984_090--Hb_000000_350 Hb_005181_100 Hb_005181_100 Hb_000984_090--Hb_005181_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.056408 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0415285 0

CAGE analysis