Hb_002400_130

Information

Type -
Description -
Location Contig2400: 108116-111224
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27160g
description POPTRDRAFT_763509; hypothetical protein
nr
ID XP_012076537.1
description PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07153 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_130 0.0 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
2 Hb_000984_090 0.0005278498 - - -
3 Hb_005144_200 0.0006612366 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
4 Hb_037949_010 0.0006962173 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
5 Hb_000107_010 0.0011279793 - - -
6 Hb_113631_010 0.0011377399 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000000_350 0.0011786187 - - -
8 Hb_005181_100 0.0015851167 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
9 Hb_000029_250 0.0016529291 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000352_250 0.0020712195 - - -
11 Hb_013204_010 0.0024055514 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
12 Hb_000696_280 0.0026412511 - - protein phosphatase-2c, putative [Ricinus communis]
13 Hb_007187_020 0.0029005172 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
14 Hb_005211_200 0.0030530932 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_004458_020 0.0031650364 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
16 Hb_068533_010 0.0032484372 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_005673_010 0.0038857246 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_030602_030 0.0040170521 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007627_020 0.0040630622 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_187024_010 0.0060469462 - - -

Gene co-expression network

sample Hb_002400_130 Hb_002400_130 Hb_000984_090 Hb_000984_090 Hb_002400_130--Hb_000984_090 Hb_005144_200 Hb_005144_200 Hb_002400_130--Hb_005144_200 Hb_037949_010 Hb_037949_010 Hb_002400_130--Hb_037949_010 Hb_000107_010 Hb_000107_010 Hb_002400_130--Hb_000107_010 Hb_113631_010 Hb_113631_010 Hb_002400_130--Hb_113631_010 Hb_000000_350 Hb_000000_350 Hb_002400_130--Hb_000000_350 Hb_000984_090--Hb_037949_010 Hb_000984_090--Hb_000107_010 Hb_000984_090--Hb_000000_350 Hb_005181_100 Hb_005181_100 Hb_000984_090--Hb_005181_100 Hb_000984_090--Hb_005144_200 Hb_005144_200--Hb_113631_010 Hb_000029_250 Hb_000029_250 Hb_005144_200--Hb_000029_250 Hb_005144_200--Hb_037949_010 Hb_000352_250 Hb_000352_250 Hb_005144_200--Hb_000352_250 Hb_037949_010--Hb_000107_010 Hb_037949_010--Hb_000000_350 Hb_037949_010--Hb_005181_100 Hb_000107_010--Hb_000000_350 Hb_000107_010--Hb_005181_100 Hb_000696_280 Hb_000696_280 Hb_000107_010--Hb_000696_280 Hb_113631_010--Hb_000029_250 Hb_113631_010--Hb_000352_250 Hb_013204_010 Hb_013204_010 Hb_113631_010--Hb_013204_010 Hb_113631_010--Hb_000984_090 Hb_000000_350--Hb_005181_100 Hb_000000_350--Hb_000696_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0389279 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0283778 0

CAGE analysis