Hb_113631_010

Information

Type -
Description -
Location Contig113631: 69-635
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113631_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_005144_200 0.0004765035 - - PREDICTED: uncharacterized protein LOC105642066 [Jatropha curcas]
3 Hb_000029_250 0.0005151896 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000352_250 0.0009334803 - - -
5 Hb_002400_130 0.0011377399 - - PREDICTED: uncharacterized protein LOC105637626 [Jatropha curcas]
6 Hb_013204_010 0.0012678127 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
7 Hb_000984_090 0.0016655894 - - -
8 Hb_037949_010 0.0018339567 - - hypothetical protein JCGZ_11175 [Jatropha curcas]
9 Hb_000107_010 0.0022657182 - - -
10 Hb_000000_350 0.0023163575 - - -
11 Hb_005181_100 0.0027228549 - - hypothetical protein POPTR_0010s15550g [Populus trichocarpa]
12 Hb_000696_280 0.0037789869 - - protein phosphatase-2c, putative [Ricinus communis]
13 Hb_007187_020 0.0040382523 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
14 Hb_005211_200 0.0041908278 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_004458_020 0.0043027707 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
16 Hb_068533_010 0.0043861712 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_187024_010 0.0049092185 - - -
18 Hb_005673_010 0.0050234564 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_030602_030 0.0051547834 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007627_020 0.0052007934 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_113631_010 Hb_113631_010 Hb_005144_200 Hb_005144_200 Hb_113631_010--Hb_005144_200 Hb_000029_250 Hb_000029_250 Hb_113631_010--Hb_000029_250 Hb_000352_250 Hb_000352_250 Hb_113631_010--Hb_000352_250 Hb_002400_130 Hb_002400_130 Hb_113631_010--Hb_002400_130 Hb_013204_010 Hb_013204_010 Hb_113631_010--Hb_013204_010 Hb_000984_090 Hb_000984_090 Hb_113631_010--Hb_000984_090 Hb_005144_200--Hb_002400_130 Hb_005144_200--Hb_000029_250 Hb_005144_200--Hb_000984_090 Hb_037949_010 Hb_037949_010 Hb_005144_200--Hb_037949_010 Hb_005144_200--Hb_000352_250 Hb_000029_250--Hb_000352_250 Hb_000029_250--Hb_013204_010 Hb_000029_250--Hb_002400_130 Hb_000029_250--Hb_000984_090 Hb_000352_250--Hb_013204_010 Hb_000352_250--Hb_002400_130 Hb_000352_250--Hb_000984_090 Hb_002400_130--Hb_000984_090 Hb_002400_130--Hb_037949_010 Hb_000107_010 Hb_000107_010 Hb_002400_130--Hb_000107_010 Hb_000000_350 Hb_000000_350 Hb_002400_130--Hb_000000_350 Hb_013204_010--Hb_005144_200 Hb_013204_010--Hb_002400_130 Hb_013204_010--Hb_000984_090 Hb_000984_090--Hb_037949_010 Hb_000984_090--Hb_000107_010 Hb_000984_090--Hb_000000_350 Hb_005181_100 Hb_005181_100 Hb_000984_090--Hb_005181_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0485266 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0355675 0

CAGE analysis