Hb_008899_010

Information

Type -
Description -
Location Contig8899: 108-1697
Sequence    

Annotation

kegg
ID vvi:100265904
description putative receptor-like protein kinase At3g47110
nr
ID XP_010269665.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]
swissprot
ID Q9SD62
description Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1
trembl
ID A5B301
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020143 PE=4 SV=1
Gene Ontology
ID GO:0016301
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008899_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]
2 Hb_074336_010 0.0014215934 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
3 Hb_000496_040 0.0024791419 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002553_150 0.0029398892 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
5 Hb_006869_020 0.0056332879 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_008052_010 0.0059828768 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002553_090 0.0076668374 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
8 Hb_004032_070 0.0087968174 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_002285_010 0.0092651913 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000050_230 0.0092753442 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000391_030 0.009308643 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_004332_060 0.0098322937 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_007313_020 0.0100665233 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000036_020 0.0106786812 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002985_020 0.0107083844 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
16 Hb_006124_020 0.011194325 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
17 Hb_001568_100 0.0124782421 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
18 Hb_001740_010 0.0136683439 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
19 Hb_001621_080 0.0141719267 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
20 Hb_013405_120 0.0145253257 - - -

Gene co-expression network

sample Hb_008899_010 Hb_008899_010 Hb_074336_010 Hb_074336_010 Hb_008899_010--Hb_074336_010 Hb_000496_040 Hb_000496_040 Hb_008899_010--Hb_000496_040 Hb_002553_150 Hb_002553_150 Hb_008899_010--Hb_002553_150 Hb_006869_020 Hb_006869_020 Hb_008899_010--Hb_006869_020 Hb_008052_010 Hb_008052_010 Hb_008899_010--Hb_008052_010 Hb_002553_090 Hb_002553_090 Hb_008899_010--Hb_002553_090 Hb_074336_010--Hb_000496_040 Hb_074336_010--Hb_002553_150 Hb_074336_010--Hb_008052_010 Hb_074336_010--Hb_006869_020 Hb_002285_010 Hb_002285_010 Hb_074336_010--Hb_002285_010 Hb_000496_040--Hb_002553_150 Hb_000496_040--Hb_008052_010 Hb_000496_040--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_000496_040--Hb_000050_230 Hb_002553_150--Hb_008052_010 Hb_002553_150--Hb_002285_010 Hb_002553_150--Hb_000050_230 Hb_006869_020--Hb_002553_090 Hb_004032_070 Hb_004032_070 Hb_006869_020--Hb_004032_070 Hb_006869_020--Hb_000496_040 Hb_006869_020--Hb_002553_150 Hb_008052_010--Hb_002285_010 Hb_008052_010--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_008052_010--Hb_000391_030 Hb_004332_060 Hb_004332_060 Hb_008052_010--Hb_004332_060 Hb_002553_090--Hb_004032_070 Hb_002553_090--Hb_074336_010 Hb_002553_090--Hb_000496_040 Hb_002553_090--Hb_002553_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0446016 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0366657 0

CAGE analysis