Hb_008052_010

Information

Type -
Description -
Location Contig8052: 12820-21153
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0044464
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008052_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002553_150 0.0030430065 - - Gram-positive signal peptide protein, YSIRK family [Streptococcus pneumoniae TCH8431/19A]
3 Hb_002285_010 0.0032823785 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000050_230 0.0032925316 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000391_030 0.0033258314 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_000496_040 0.0035037532 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004332_060 0.0038494965 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007313_020 0.004083733 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_074336_010 0.004561297 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
10 Hb_000036_020 0.00469591 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002985_020 0.0047256141 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_006124_020 0.005211571 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
13 Hb_008899_010 0.0059828768 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Nelumbo nucifera]
14 Hb_001568_100 0.0064955357 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
15 Hb_001740_010 0.0076856879 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
16 Hb_001621_080 0.0081892938 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
17 Hb_013405_120 0.0085427097 - - -
18 Hb_003894_130 0.0089442155 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_002400_120 0.009570652 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
20 Hb_001611_030 0.0098698847 - - -

Gene co-expression network

sample Hb_008052_010 Hb_008052_010 Hb_002553_150 Hb_002553_150 Hb_008052_010--Hb_002553_150 Hb_002285_010 Hb_002285_010 Hb_008052_010--Hb_002285_010 Hb_000050_230 Hb_000050_230 Hb_008052_010--Hb_000050_230 Hb_000391_030 Hb_000391_030 Hb_008052_010--Hb_000391_030 Hb_000496_040 Hb_000496_040 Hb_008052_010--Hb_000496_040 Hb_004332_060 Hb_004332_060 Hb_008052_010--Hb_004332_060 Hb_002553_150--Hb_000496_040 Hb_074336_010 Hb_074336_010 Hb_002553_150--Hb_074336_010 Hb_008899_010 Hb_008899_010 Hb_002553_150--Hb_008899_010 Hb_002553_150--Hb_002285_010 Hb_002553_150--Hb_000050_230 Hb_002285_010--Hb_000050_230 Hb_002285_010--Hb_000391_030 Hb_002285_010--Hb_004332_060 Hb_007313_020 Hb_007313_020 Hb_002285_010--Hb_007313_020 Hb_000036_020 Hb_000036_020 Hb_002285_010--Hb_000036_020 Hb_002985_020 Hb_002985_020 Hb_002285_010--Hb_002985_020 Hb_000050_230--Hb_000391_030 Hb_000050_230--Hb_004332_060 Hb_000050_230--Hb_007313_020 Hb_000050_230--Hb_000036_020 Hb_000050_230--Hb_002985_020 Hb_000391_030--Hb_004332_060 Hb_000391_030--Hb_007313_020 Hb_000391_030--Hb_000036_020 Hb_000391_030--Hb_002985_020 Hb_000496_040--Hb_074336_010 Hb_000496_040--Hb_008899_010 Hb_000496_040--Hb_002285_010 Hb_000496_040--Hb_000050_230 Hb_004332_060--Hb_007313_020 Hb_004332_060--Hb_000036_020 Hb_004332_060--Hb_002985_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0904775 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0765135 0

CAGE analysis