Hb_002677_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig2677: 76904-78617
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12530g
description hypothetical protein
nr
ID XP_011006617.1
description PREDICTED: transcription factor RAX2 [Populus euphratica]
swissprot
ID Q9SJL7
description Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1
trembl
ID U5GA63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s12530g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002677_010 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
2 Hb_032582_010 0.0482022951 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_008616_020 0.0618593936 - - unnamed protein product [Vitis vinifera]
4 Hb_000185_060 0.0682736734 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
5 Hb_181092_010 0.0764769255 - - unnamed protein product [Vitis vinifera]
6 Hb_002986_110 0.087322399 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]
7 Hb_008053_070 0.0881196309 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
8 Hb_001376_040 0.0908521615 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
9 Hb_013654_010 0.0913919984 - - unnamed protein product [Vitis vinifera]
10 Hb_001269_020 0.0943252217 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
11 Hb_000905_030 0.0967709057 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
12 Hb_000856_350 0.0980091087 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
13 Hb_007729_010 0.1044031281 - - unnamed protein product [Vitis vinifera]
14 Hb_005846_010 0.1049645168 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
15 Hb_001168_080 0.1051492489 - - kinase, putative [Ricinus communis]
16 Hb_032443_030 0.1054269419 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_001427_130 0.1054467805 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
18 Hb_032215_070 0.105447556 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003010_060 0.1059045599 - - Patatin T5 precursor, putative [Ricinus communis]
20 Hb_008052_020 0.1068095957 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]

Gene co-expression network

sample Hb_002677_010 Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_002677_010--Hb_032582_010 Hb_008616_020 Hb_008616_020 Hb_002677_010--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_002677_010--Hb_000185_060 Hb_181092_010 Hb_181092_010 Hb_002677_010--Hb_181092_010 Hb_002986_110 Hb_002986_110 Hb_002677_010--Hb_002986_110 Hb_008053_070 Hb_008053_070 Hb_002677_010--Hb_008053_070 Hb_032582_010--Hb_008616_020 Hb_032582_010--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_032582_010--Hb_013654_010 Hb_000905_030 Hb_000905_030 Hb_032582_010--Hb_000905_030 Hb_032582_010--Hb_000185_060 Hb_008616_020--Hb_000185_060 Hb_001376_040 Hb_001376_040 Hb_008616_020--Hb_001376_040 Hb_008616_020--Hb_008053_070 Hb_008616_020--Hb_000905_030 Hb_000185_060--Hb_008053_070 Hb_000185_060--Hb_181092_010 Hb_000185_060--Hb_001376_040 Hb_000856_350 Hb_000856_350 Hb_181092_010--Hb_000856_350 Hb_156949_010 Hb_156949_010 Hb_181092_010--Hb_156949_010 Hb_181092_010--Hb_002986_110 Hb_181092_010--Hb_013654_010 Hb_002986_110--Hb_013654_010 Hb_002005_010 Hb_002005_010 Hb_002986_110--Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_002986_110--Hb_008214_010 Hb_008052_020 Hb_008052_020 Hb_002986_110--Hb_008052_020 Hb_032443_030 Hb_032443_030 Hb_002986_110--Hb_032443_030 Hb_032215_070 Hb_032215_070 Hb_002986_110--Hb_032215_070 Hb_008053_070--Hb_032582_010 Hb_012053_030 Hb_012053_030 Hb_008053_070--Hb_012053_030 Hb_008053_070--Hb_001376_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0289284 2.121 0.0183282 0.0569485 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.49918 0

CAGE analysis