Hb_004162_040

Information

Type -
Description -
Location Contig4162: 19654-24889
Sequence    

Annotation

kegg
ID tru:101074276
description thymus-specific serine protease-like
nr
ID XP_011438787.1
description PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
swissprot
ID -
description -
trembl
ID T0PIW8
description Uncharacterized protein OS=Saprolegnia diclina VS20 GN=SDRG_16815 PE=4 SV=1
Gene Ontology
ID GO:0004180
description lysosomal pro-x carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_040 0.0 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
2 Hb_001709_070 0.0835420745 - - carbohydrate binding protein, putative [Ricinus communis]
3 Hb_124385_010 0.1060901669 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
4 Hb_120268_010 0.1170416308 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
5 Hb_008503_020 0.1221204853 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_000221_170 0.1348072877 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
7 Hb_000203_060 0.136897836 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
8 Hb_029508_030 0.1402317798 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
9 Hb_000512_040 0.1452924176 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_001489_030 0.1490399566 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
11 Hb_001769_030 0.14907997 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
12 Hb_001864_010 0.1511195826 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000556_200 0.1526655648 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
14 Hb_052186_010 0.1586205891 - - hypothetical protein JCGZ_17055 [Jatropha curcas]
15 Hb_000876_050 0.1626125917 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
16 Hb_006106_020 0.162675033 - - ring finger protein, putative [Ricinus communis]
17 Hb_001454_160 0.1650129558 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_002555_020 0.1652017764 - - Receptor-like protein kinase [Medicago truncatula]
19 Hb_003878_100 0.1652893837 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
20 Hb_001623_470 0.1661930451 - - ammonium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004162_040 Hb_004162_040 Hb_001709_070 Hb_001709_070 Hb_004162_040--Hb_001709_070 Hb_124385_010 Hb_124385_010 Hb_004162_040--Hb_124385_010 Hb_120268_010 Hb_120268_010 Hb_004162_040--Hb_120268_010 Hb_008503_020 Hb_008503_020 Hb_004162_040--Hb_008503_020 Hb_000221_170 Hb_000221_170 Hb_004162_040--Hb_000221_170 Hb_000203_060 Hb_000203_060 Hb_004162_040--Hb_000203_060 Hb_001709_070--Hb_124385_010 Hb_001709_070--Hb_008503_020 Hb_001709_070--Hb_000221_170 Hb_029508_030 Hb_029508_030 Hb_001709_070--Hb_029508_030 Hb_001623_470 Hb_001623_470 Hb_001709_070--Hb_001623_470 Hb_001856_060 Hb_001856_060 Hb_124385_010--Hb_001856_060 Hb_001013_040 Hb_001013_040 Hb_124385_010--Hb_001013_040 Hb_124385_010--Hb_029508_030 Hb_124385_010--Hb_008503_020 Hb_120268_010--Hb_000203_060 Hb_148121_030 Hb_148121_030 Hb_120268_010--Hb_148121_030 Hb_120268_010--Hb_001709_070 Hb_001769_030 Hb_001769_030 Hb_120268_010--Hb_001769_030 Hb_120268_010--Hb_124385_010 Hb_001489_030 Hb_001489_030 Hb_008503_020--Hb_001489_030 Hb_003086_200 Hb_003086_200 Hb_008503_020--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_008503_020--Hb_012053_030 Hb_001864_010 Hb_001864_010 Hb_008503_020--Hb_001864_010 Hb_008053_070 Hb_008053_070 Hb_008503_020--Hb_008053_070 Hb_000876_050 Hb_000876_050 Hb_000221_170--Hb_000876_050 Hb_000221_170--Hb_029508_030 Hb_000221_170--Hb_001864_010 Hb_005489_160 Hb_005489_160 Hb_000221_170--Hb_005489_160 Hb_005333_100 Hb_005333_100 Hb_000221_170--Hb_005333_100 Hb_000203_060--Hb_148121_030 Hb_000203_060--Hb_001709_070 Hb_000203_060--Hb_001623_470 Hb_000203_060--Hb_001769_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0207887 5.07219 0.5201 0.0154566 0 0.0363949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.78672 0.902603

CAGE analysis