Hb_001266_020

Information

Type -
Description -
Location Contig1266: 29033-29866
Sequence    

Annotation

kegg
ID rcu:RCOM_0535010
description hypothetical protein
nr
ID XP_012092680.1
description PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22166 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08018: 29004-29196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_020 0.0 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
2 Hb_001355_110 0.0836350571 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
3 Hb_001623_470 0.1192389876 - - ammonium transporter, putative [Ricinus communis]
4 Hb_012753_200 0.1201164837 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
5 Hb_002805_150 0.1208503136 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_006949_030 0.1225785715 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_001621_020 0.12422983 - - -
8 Hb_001331_040 0.1253748039 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
9 Hb_004884_200 0.1276022321 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
10 Hb_000381_030 0.1297392377 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
11 Hb_002686_390 0.130302907 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
12 Hb_002391_350 0.1392184343 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
13 Hb_003807_020 0.1397703701 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
14 Hb_012395_070 0.1407618066 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
15 Hb_001514_210 0.1419797455 - - hypothetical protein VITISV_012133 [Vitis vinifera]
16 Hb_001596_040 0.1443577254 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
17 Hb_000616_050 0.1443732861 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
18 Hb_001102_270 0.1478633096 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
19 Hb_000010_200 0.1481858918 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_000335_050 0.148360225 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001266_020 Hb_001266_020 Hb_001355_110 Hb_001355_110 Hb_001266_020--Hb_001355_110 Hb_001623_470 Hb_001623_470 Hb_001266_020--Hb_001623_470 Hb_012753_200 Hb_012753_200 Hb_001266_020--Hb_012753_200 Hb_002805_150 Hb_002805_150 Hb_001266_020--Hb_002805_150 Hb_006949_030 Hb_006949_030 Hb_001266_020--Hb_006949_030 Hb_001621_020 Hb_001621_020 Hb_001266_020--Hb_001621_020 Hb_001355_110--Hb_001623_470 Hb_001355_110--Hb_001621_020 Hb_001102_270 Hb_001102_270 Hb_001355_110--Hb_001102_270 Hb_001355_110--Hb_012753_200 Hb_000489_020 Hb_000489_020 Hb_001355_110--Hb_000489_020 Hb_001769_030 Hb_001769_030 Hb_001623_470--Hb_001769_030 Hb_001623_470--Hb_000489_020 Hb_005333_100 Hb_005333_100 Hb_001623_470--Hb_005333_100 Hb_000976_060 Hb_000976_060 Hb_001623_470--Hb_000976_060 Hb_012753_200--Hb_002805_150 Hb_000579_180 Hb_000579_180 Hb_012753_200--Hb_000579_180 Hb_003807_020 Hb_003807_020 Hb_012753_200--Hb_003807_020 Hb_002007_140 Hb_002007_140 Hb_012753_200--Hb_002007_140 Hb_012395_070 Hb_012395_070 Hb_012753_200--Hb_012395_070 Hb_001514_210 Hb_001514_210 Hb_012753_200--Hb_001514_210 Hb_002805_150--Hb_012395_070 Hb_002805_150--Hb_003807_020 Hb_003031_030 Hb_003031_030 Hb_002805_150--Hb_003031_030 Hb_002805_150--Hb_000579_180 Hb_002805_150--Hb_001514_210 Hb_001331_040 Hb_001331_040 Hb_006949_030--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006949_030--Hb_000381_030 Hb_006938_010 Hb_006938_010 Hb_006949_030--Hb_006938_010 Hb_006949_030--Hb_001621_020 Hb_000010_200 Hb_000010_200 Hb_006949_030--Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_006949_030--Hb_002686_390 Hb_001621_020--Hb_001102_270 Hb_004079_110 Hb_004079_110 Hb_001621_020--Hb_004079_110 Hb_162286_030 Hb_162286_030 Hb_001621_020--Hb_162286_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.36221 0.345581 0.263196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0638838 0 0 2.07108 0.202493

CAGE analysis