Hb_000844_010

Information

Type -
Description -
Location Contig844: 29851-34414
Sequence    

Annotation

kegg
ID rcu:RCOM_1592440
description amino acid transporter, putative
nr
ID XP_012071723.1
description PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID A0A067KQC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04336 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60171: 29873-34385 , PASA_asmbl_60172: 31258-31695 , PASA_asmbl_60173: 30394-31180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000844_010 0.0 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
2 Hb_000141_220 0.1362956699 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
3 Hb_017417_030 0.138689462 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
4 Hb_164010_090 0.1485279122 - - cellulose synthase, putative [Ricinus communis]
5 Hb_141142_010 0.1523169894 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
6 Hb_135811_060 0.1562111027 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
7 Hb_133636_010 0.1640507388 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
8 Hb_002783_320 0.1651187272 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
9 Hb_046117_050 0.1676218114 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
10 Hb_004341_010 0.1686087931 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
11 Hb_000703_320 0.1770899312 - - receptor-kinase, putative [Ricinus communis]
12 Hb_003299_010 0.1783599832 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_000676_030 0.179265407 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
14 Hb_011218_050 0.1823302076 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_000077_460 0.1825368335 - - -
16 Hb_017866_020 0.1830615095 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
17 Hb_101089_010 0.1836449759 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
18 Hb_011909_030 0.1849629805 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
19 Hb_001073_060 0.185220726 - - phosphate transporter 1 [Hevea brasiliensis]
20 Hb_005081_080 0.1865405888 - - hypothetical protein JCGZ_16787 [Jatropha curcas]

Gene co-expression network

sample Hb_000844_010 Hb_000844_010 Hb_000141_220 Hb_000141_220 Hb_000844_010--Hb_000141_220 Hb_017417_030 Hb_017417_030 Hb_000844_010--Hb_017417_030 Hb_164010_090 Hb_164010_090 Hb_000844_010--Hb_164010_090 Hb_141142_010 Hb_141142_010 Hb_000844_010--Hb_141142_010 Hb_135811_060 Hb_135811_060 Hb_000844_010--Hb_135811_060 Hb_133636_010 Hb_133636_010 Hb_000844_010--Hb_133636_010 Hb_000141_220--Hb_164010_090 Hb_017866_020 Hb_017866_020 Hb_000141_220--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_000141_220--Hb_002003_020 Hb_000077_460 Hb_000077_460 Hb_000141_220--Hb_000077_460 Hb_000045_180 Hb_000045_180 Hb_000141_220--Hb_000045_180 Hb_017417_030--Hb_135811_060 Hb_002219_090 Hb_002219_090 Hb_017417_030--Hb_002219_090 Hb_001073_060 Hb_001073_060 Hb_017417_030--Hb_001073_060 Hb_001009_110 Hb_001009_110 Hb_017417_030--Hb_001009_110 Hb_149056_010 Hb_149056_010 Hb_017417_030--Hb_149056_010 Hb_002248_090 Hb_002248_090 Hb_017417_030--Hb_002248_090 Hb_004195_170 Hb_004195_170 Hb_164010_090--Hb_004195_170 Hb_005380_040 Hb_005380_040 Hb_164010_090--Hb_005380_040 Hb_164010_090--Hb_017866_020 Hb_000589_180 Hb_000589_180 Hb_164010_090--Hb_000589_180 Hb_003384_070 Hb_003384_070 Hb_141142_010--Hb_003384_070 Hb_003175_020 Hb_003175_020 Hb_141142_010--Hb_003175_020 Hb_025194_010 Hb_025194_010 Hb_141142_010--Hb_025194_010 Hb_141142_010--Hb_133636_010 Hb_005157_010 Hb_005157_010 Hb_141142_010--Hb_005157_010 Hb_000856_240 Hb_000856_240 Hb_135811_060--Hb_000856_240 Hb_000703_320 Hb_000703_320 Hb_135811_060--Hb_000703_320 Hb_135811_060--Hb_000045_180 Hb_135811_060--Hb_149056_010 Hb_005081_080 Hb_005081_080 Hb_135811_060--Hb_005081_080 Hb_003299_010 Hb_003299_010 Hb_133636_010--Hb_003299_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_133636_010--Hb_005157_010 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9114 87.7907 2.83669 24.6269 4.79631 2.08934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.288744 0.0524293 0 52.4942 0.591193

CAGE analysis