Hb_002219_090

Information

Type -
Description -
Location Contig2219: 90402-94694
Sequence    

Annotation

kegg
ID rcu:RCOM_0850700
description protein kinase atmrk1, putative (EC:2.7.10.2)
nr
ID XP_002517344.1
description protein kinase atmrk1, putative [Ricinus communis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9RUU3
description Protein kinase atmrk1, putative OS=Ricinus communis GN=RCOM_0850700 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22991: 90571-91717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002219_090 0.0 - - protein kinase atmrk1, putative [Ricinus communis]
2 Hb_149056_010 0.086843933 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
3 Hb_001073_060 0.0913796955 - - phosphate transporter 1 [Hevea brasiliensis]
4 Hb_011791_010 0.0924785844 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
5 Hb_017417_030 0.0996540296 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
6 Hb_000676_030 0.1031654572 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
7 Hb_001009_110 0.1033209676 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
8 Hb_005054_300 0.1073896044 - - aquaporin [Hevea brasiliensis]
9 Hb_000856_240 0.111771425 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_111985_060 0.1123784288 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
11 Hb_002621_030 0.1147569171 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
12 Hb_003090_060 0.1155041646 - - PAR1 protein [Theobroma cacao]
13 Hb_000333_130 0.1163833561 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_000579_220 0.1223924634 - - transcription factor, putative [Ricinus communis]
15 Hb_079955_010 0.1230774982 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
16 Hb_009778_030 0.125186693 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
17 Hb_020648_020 0.1264120567 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
18 Hb_106969_010 0.1272104232 - - Cytochrome P450 76C4 [Glycine soja]
19 Hb_000123_310 0.1296139703 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
20 Hb_000345_190 0.1337213816 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]

Gene co-expression network

sample Hb_002219_090 Hb_002219_090 Hb_149056_010 Hb_149056_010 Hb_002219_090--Hb_149056_010 Hb_001073_060 Hb_001073_060 Hb_002219_090--Hb_001073_060 Hb_011791_010 Hb_011791_010 Hb_002219_090--Hb_011791_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_000676_030 Hb_000676_030 Hb_002219_090--Hb_000676_030 Hb_001009_110 Hb_001009_110 Hb_002219_090--Hb_001009_110 Hb_000856_240 Hb_000856_240 Hb_149056_010--Hb_000856_240 Hb_149056_010--Hb_001009_110 Hb_000579_220 Hb_000579_220 Hb_149056_010--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_001073_060--Hb_000856_240 Hb_001073_060--Hb_011791_010 Hb_001073_060--Hb_000676_030 Hb_000333_130 Hb_000333_130 Hb_001073_060--Hb_000333_130 Hb_001073_060--Hb_149056_010 Hb_011791_010--Hb_000676_030 Hb_079955_010 Hb_079955_010 Hb_011791_010--Hb_079955_010 Hb_011791_010--Hb_000333_130 Hb_106969_010 Hb_106969_010 Hb_011791_010--Hb_106969_010 Hb_135811_060 Hb_135811_060 Hb_017417_030--Hb_135811_060 Hb_017417_030--Hb_001073_060 Hb_017417_030--Hb_001009_110 Hb_017417_030--Hb_149056_010 Hb_002248_090 Hb_002248_090 Hb_017417_030--Hb_002248_090 Hb_002621_030 Hb_002621_030 Hb_000676_030--Hb_002621_030 Hb_000676_030--Hb_079955_010 Hb_005000_200 Hb_005000_200 Hb_000676_030--Hb_005000_200 Hb_011214_140 Hb_011214_140 Hb_001009_110--Hb_011214_140 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_001009_110--Hb_009778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183201 34.3654 2.75932 5.20872 0.231657 0.166757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.030944 0 0 13.4571 1.68125

CAGE analysis