Hb_005000_200

Information

Type -
Description -
Location Contig5000: 216266-217312
Sequence    

Annotation

kegg
ID crb:CARUB_v10027570mg
description hypothetical protein
nr
ID XP_012076941.1
description PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45820: 216520-217457 , PASA_asmbl_45821: 216826-217457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_200 0.0 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
2 Hb_000907_120 0.109339698 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
3 Hb_008406_020 0.1128381268 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
4 Hb_000676_030 0.1135387164 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
5 Hb_003602_090 0.1208280928 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
6 Hb_002410_010 0.128909635 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
7 Hb_009510_050 0.1317422032 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001073_060 0.1329522586 - - phosphate transporter 1 [Hevea brasiliensis]
9 Hb_003556_070 0.1343862754 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_068332_010 0.1397500259 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000521_210 0.1421377558 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_002621_030 0.1435423187 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
13 Hb_002248_090 0.1436344432 - - metallothionein 3-like protein [Hevea brasiliensis]
14 Hb_065230_010 0.1463157433 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
15 Hb_006615_180 0.1473821713 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
16 Hb_020648_020 0.1485979604 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
17 Hb_006020_010 0.149930633 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
18 Hb_000098_250 0.150431573 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
19 Hb_019040_010 0.1517574577 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
20 Hb_000152_250 0.1523248184 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]

Gene co-expression network

sample Hb_005000_200 Hb_005000_200 Hb_000907_120 Hb_000907_120 Hb_005000_200--Hb_000907_120 Hb_008406_020 Hb_008406_020 Hb_005000_200--Hb_008406_020 Hb_000676_030 Hb_000676_030 Hb_005000_200--Hb_000676_030 Hb_003602_090 Hb_003602_090 Hb_005000_200--Hb_003602_090 Hb_002410_010 Hb_002410_010 Hb_005000_200--Hb_002410_010 Hb_009510_050 Hb_009510_050 Hb_005000_200--Hb_009510_050 Hb_000152_250 Hb_000152_250 Hb_000907_120--Hb_000152_250 Hb_000907_120--Hb_008406_020 Hb_000521_210 Hb_000521_210 Hb_000907_120--Hb_000521_210 Hb_006020_010 Hb_006020_010 Hb_000907_120--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000907_120--Hb_006364_020 Hb_000111_190 Hb_000111_190 Hb_000907_120--Hb_000111_190 Hb_009581_040 Hb_009581_040 Hb_008406_020--Hb_009581_040 Hb_002276_100 Hb_002276_100 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_003430_020 Hb_003430_020 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010 Hb_011791_010 Hb_011791_010 Hb_000676_030--Hb_011791_010 Hb_002621_030 Hb_002621_030 Hb_000676_030--Hb_002621_030 Hb_001073_060 Hb_001073_060 Hb_000676_030--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000676_030--Hb_002219_090 Hb_079955_010 Hb_079955_010 Hb_000676_030--Hb_079955_010 Hb_003602_090--Hb_009510_050 Hb_006615_180 Hb_006615_180 Hb_003602_090--Hb_006615_180 Hb_000723_060 Hb_000723_060 Hb_003602_090--Hb_000723_060 Hb_082870_010 Hb_082870_010 Hb_003602_090--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_003602_090--Hb_117127_010 Hb_019040_010 Hb_019040_010 Hb_003602_090--Hb_019040_010 Hb_020648_020 Hb_020648_020 Hb_002410_010--Hb_020648_020 Hb_000098_250 Hb_000098_250 Hb_002410_010--Hb_000098_250 Hb_000338_030 Hb_000338_030 Hb_002410_010--Hb_000338_030 Hb_002410_010--Hb_117127_010 Hb_065230_010 Hb_065230_010 Hb_002410_010--Hb_065230_010 Hb_000771_030 Hb_000771_030 Hb_002410_010--Hb_000771_030 Hb_009510_050--Hb_006615_180 Hb_009510_050--Hb_082870_010 Hb_009510_050--Hb_117127_010 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.616913 56.0534 11.6865 23.6334 0.954805 0.540807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191495 0 0 28.0439 1.46827

CAGE analysis