Hb_068332_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig68332: 2085-8251
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53934: 5184-5386 , PASA_asmbl_53935: 5562-6262 , PASA_asmbl_53937: 2240-8143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068332_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_008406_020 0.1035871915 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
3 Hb_168068_010 0.1142171878 - - Disease resistance protein RFL1, putative [Ricinus communis]
4 Hb_000120_070 0.1231813203 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
5 Hb_002276_100 0.1267112703 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
6 Hb_003376_200 0.1303054523 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_003556_070 0.1303706609 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_006020_010 0.1306831933 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
9 Hb_010174_190 0.1314119717 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
10 Hb_000907_120 0.1323086254 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
11 Hb_000836_390 0.1355078796 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
12 Hb_000977_090 0.136472679 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
13 Hb_005000_200 0.1397500259 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
14 Hb_000771_030 0.1410153276 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
15 Hb_022501_020 0.1426179488 - - AMP dependent CoA ligase, putative [Ricinus communis]
16 Hb_009581_040 0.1446600642 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
17 Hb_006241_010 0.1447616538 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
18 Hb_019040_010 0.1456125303 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
19 Hb_010381_110 0.1456924541 - - PRA1 family protein [Theobroma cacao]
20 Hb_001148_040 0.1474129804 - - hypothetical protein JCGZ_07831 [Jatropha curcas]

Gene co-expression network

sample Hb_068332_010 Hb_068332_010 Hb_008406_020 Hb_008406_020 Hb_068332_010--Hb_008406_020 Hb_168068_010 Hb_168068_010 Hb_068332_010--Hb_168068_010 Hb_000120_070 Hb_000120_070 Hb_068332_010--Hb_000120_070 Hb_002276_100 Hb_002276_100 Hb_068332_010--Hb_002276_100 Hb_003376_200 Hb_003376_200 Hb_068332_010--Hb_003376_200 Hb_003556_070 Hb_003556_070 Hb_068332_010--Hb_003556_070 Hb_009581_040 Hb_009581_040 Hb_008406_020--Hb_009581_040 Hb_000907_120 Hb_000907_120 Hb_008406_020--Hb_000907_120 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_003430_020 Hb_003430_020 Hb_008406_020--Hb_003430_020 Hb_005087_030 Hb_005087_030 Hb_168068_010--Hb_005087_030 Hb_000771_030 Hb_000771_030 Hb_168068_010--Hb_000771_030 Hb_131662_010 Hb_131662_010 Hb_168068_010--Hb_131662_010 Hb_004544_090 Hb_004544_090 Hb_168068_010--Hb_004544_090 Hb_000417_120 Hb_000417_120 Hb_168068_010--Hb_000417_120 Hb_000836_390 Hb_000836_390 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000075_110 Hb_000075_110 Hb_000120_070--Hb_000075_110 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_074312_020 Hb_074312_020 Hb_002276_100--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_000280_110 Hb_000280_110 Hb_002276_100--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_134017_010 Hb_134017_010 Hb_003376_200--Hb_134017_010 Hb_003376_200--Hb_074312_020 Hb_004447_020 Hb_004447_020 Hb_003376_200--Hb_004447_020 Hb_001862_060 Hb_001862_060 Hb_003376_200--Hb_001862_060 Hb_000407_080 Hb_000407_080 Hb_003376_200--Hb_000407_080 Hb_003376_200--Hb_008406_020 Hb_073119_010 Hb_073119_010 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_017604_020 Hb_017604_020 Hb_003556_070--Hb_017604_020 Hb_003556_070--Hb_000280_110 Hb_000977_090 Hb_000977_090 Hb_003556_070--Hb_000977_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513397 15.2491 4.40109 8.40302 0.192513 0.0836076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0285946 0.0562546 0.559703 11.231 1.60873

CAGE analysis