Hb_000676_030

Information

Type -
Description -
Location Contig676: 15202-17116
Sequence    

Annotation

kegg
ID rcu:RCOM_0534670
description Mitochondrial chaperone BCS1, putative
nr
ID XP_012086537.1
description PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID A0A067JPD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24013 PE=3 SV=1
Gene Ontology
ID GO:0005524
description mitochondrial chaperone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53539: 16060-16450 , PASA_asmbl_53540: 16619-16831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_030 0.0 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
2 Hb_011791_010 0.090686715 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
3 Hb_002621_030 0.0919017508 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
4 Hb_001073_060 0.1029246855 - - phosphate transporter 1 [Hevea brasiliensis]
5 Hb_002219_090 0.1031654572 - - protein kinase atmrk1, putative [Ricinus communis]
6 Hb_079955_010 0.110402422 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
7 Hb_005000_200 0.1135387164 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
8 Hb_151281_010 0.115505806 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
9 Hb_131591_010 0.1183899264 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
10 Hb_003090_060 0.1245618063 - - PAR1 protein [Theobroma cacao]
11 Hb_000856_240 0.1319156972 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_002783_320 0.1360114826 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
13 Hb_165404_010 0.1388995784 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
14 Hb_020648_020 0.1396657046 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
15 Hb_002410_010 0.1419344329 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_111985_060 0.1467185726 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
17 Hb_006634_080 0.1475975712 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
18 Hb_000333_130 0.1497004521 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_017417_030 0.1501880969 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_001481_030 0.1506473784 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000676_030 Hb_000676_030 Hb_011791_010 Hb_011791_010 Hb_000676_030--Hb_011791_010 Hb_002621_030 Hb_002621_030 Hb_000676_030--Hb_002621_030 Hb_001073_060 Hb_001073_060 Hb_000676_030--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000676_030--Hb_002219_090 Hb_079955_010 Hb_079955_010 Hb_000676_030--Hb_079955_010 Hb_005000_200 Hb_005000_200 Hb_000676_030--Hb_005000_200 Hb_011791_010--Hb_002219_090 Hb_011791_010--Hb_001073_060 Hb_011791_010--Hb_079955_010 Hb_000333_130 Hb_000333_130 Hb_011791_010--Hb_000333_130 Hb_106969_010 Hb_106969_010 Hb_011791_010--Hb_106969_010 Hb_003090_060 Hb_003090_060 Hb_002621_030--Hb_003090_060 Hb_002621_030--Hb_079955_010 Hb_131591_010 Hb_131591_010 Hb_002621_030--Hb_131591_010 Hb_151281_010 Hb_151281_010 Hb_002621_030--Hb_151281_010 Hb_111985_060 Hb_111985_060 Hb_002621_030--Hb_111985_060 Hb_001073_060--Hb_002219_090 Hb_000856_240 Hb_000856_240 Hb_001073_060--Hb_000856_240 Hb_001073_060--Hb_000333_130 Hb_149056_010 Hb_149056_010 Hb_001073_060--Hb_149056_010 Hb_002219_090--Hb_149056_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_001009_110 Hb_001009_110 Hb_002219_090--Hb_001009_110 Hb_079955_010--Hb_151281_010 Hb_079955_010--Hb_003090_060 Hb_079955_010--Hb_131591_010 Hb_079955_010--Hb_111985_060 Hb_000907_120 Hb_000907_120 Hb_005000_200--Hb_000907_120 Hb_008406_020 Hb_008406_020 Hb_005000_200--Hb_008406_020 Hb_003602_090 Hb_003602_090 Hb_005000_200--Hb_003602_090 Hb_002410_010 Hb_002410_010 Hb_005000_200--Hb_002410_010 Hb_009510_050 Hb_009510_050 Hb_005000_200--Hb_009510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0910344 8.88643 1.3114 1.89235 0.0252912 0.0471207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0287367 0 0 4.36372 0.142309

CAGE analysis