Hb_149056_010

Information

Type -
Description -
Location Contig149056: 24107-24542
Sequence    

Annotation

kegg
ID cic:CICLE_v10016664mg
description hypothetical protein
nr
ID XP_006447962.1
description hypothetical protein CICLE_v10016664mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U5M5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016664mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149056_010 0.0 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
2 Hb_000856_240 0.082605513 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_002219_090 0.086843933 - - protein kinase atmrk1, putative [Ricinus communis]
4 Hb_001009_110 0.1059478201 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
5 Hb_000579_220 0.1059529285 - - transcription factor, putative [Ricinus communis]
6 Hb_009778_030 0.1067891263 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
7 Hb_000123_310 0.1079418673 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
8 Hb_000333_130 0.1109394975 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_005054_300 0.1155212594 - - aquaporin [Hevea brasiliensis]
10 Hb_001073_060 0.1157284414 - - phosphate transporter 1 [Hevea brasiliensis]
11 Hb_135811_060 0.1190124764 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_011791_010 0.1198128621 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
13 Hb_020648_020 0.1243475669 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
14 Hb_017417_030 0.1259011705 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
15 Hb_000146_110 0.1321849759 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
16 Hb_106969_010 0.132343934 - - Cytochrome P450 76C4 [Glycine soja]
17 Hb_111985_060 0.1333472394 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
18 Hb_000521_210 0.1339329535 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_000521_290 0.1364860313 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
20 Hb_000338_030 0.1365086593 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]

Gene co-expression network

sample Hb_149056_010 Hb_149056_010 Hb_000856_240 Hb_000856_240 Hb_149056_010--Hb_000856_240 Hb_002219_090 Hb_002219_090 Hb_149056_010--Hb_002219_090 Hb_001009_110 Hb_001009_110 Hb_149056_010--Hb_001009_110 Hb_000579_220 Hb_000579_220 Hb_149056_010--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_000255_020 Hb_000255_020 Hb_000856_240--Hb_000255_020 Hb_000521_210 Hb_000521_210 Hb_000856_240--Hb_000521_210 Hb_001073_060 Hb_001073_060 Hb_000856_240--Hb_001073_060 Hb_000856_240--Hb_000579_220 Hb_135811_060 Hb_135811_060 Hb_000856_240--Hb_135811_060 Hb_002219_090--Hb_001073_060 Hb_011791_010 Hb_011791_010 Hb_002219_090--Hb_011791_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_000676_030 Hb_000676_030 Hb_002219_090--Hb_000676_030 Hb_002219_090--Hb_001009_110 Hb_011214_140 Hb_011214_140 Hb_001009_110--Hb_011214_140 Hb_000333_130 Hb_000333_130 Hb_001009_110--Hb_000333_130 Hb_118777_010 Hb_118777_010 Hb_001009_110--Hb_118777_010 Hb_001009_110--Hb_009778_030 Hb_007237_090 Hb_007237_090 Hb_000579_220--Hb_007237_090 Hb_084127_010 Hb_084127_010 Hb_000579_220--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_000579_220--Hb_006615_190 Hb_000172_010 Hb_000172_010 Hb_000579_220--Hb_000172_010 Hb_020648_020 Hb_020648_020 Hb_000579_220--Hb_020648_020 Hb_000579_220--Hb_000521_210 Hb_000146_110 Hb_000146_110 Hb_009778_030--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_009778_030--Hb_000003_620 Hb_002890_060 Hb_002890_060 Hb_009778_030--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_001363_030 Hb_001363_030 Hb_009778_030--Hb_001363_030 Hb_000123_310--Hb_002890_060 Hb_000123_310--Hb_000146_110 Hb_005054_300 Hb_005054_300 Hb_000123_310--Hb_005054_300 Hb_041290_030 Hb_041290_030 Hb_000123_310--Hb_041290_030 Hb_021596_070 Hb_021596_070 Hb_000123_310--Hb_021596_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.57981 0.311368 0.985052 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.06496 0.386846

CAGE analysis