Hb_003384_070

Information

Type -
Description -
Location Contig3384: 138356-141742
Sequence    

Annotation

kegg
ID pop:POPTR_0019s15170g
description POPTRDRAFT_574466; Chain A family protein
nr
ID XP_011041773.1
description PREDICTED: methylesterase 17-like [Populus euphratica]
swissprot
ID Q9SG92
description Methylesterase 17 OS=Arabidopsis thaliana GN=MES17 PE=1 SV=1
trembl
ID B9INK7
description Chain A family protein OS=Populus trichocarpa GN=POPTR_0019s15170g PE=4 SV=1
Gene Ontology
ID GO:0016788
description methylesterase 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35395: 138420-141201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003384_070 0.0 - - PREDICTED: methylesterase 17-like [Populus euphratica]
2 Hb_011382_050 0.1480858848 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
3 Hb_141142_010 0.1726285903 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
4 Hb_001351_040 0.1753601073 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
5 Hb_000315_030 0.1770748724 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_101089_010 0.1790629843 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
7 Hb_000803_100 0.1854587958 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
8 Hb_048848_010 0.2119392592 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
9 Hb_001584_010 0.2155238676 - - kelch repeat protein, putative [Ricinus communis]
10 Hb_000017_150 0.2175923976 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
11 Hb_001103_040 0.2183857396 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
12 Hb_000189_120 0.2216315897 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
13 Hb_184705_010 0.2219488975 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
14 Hb_007144_010 0.2265847681 - - -
15 Hb_000977_010 0.22678298 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
16 Hb_005839_100 0.2268875248 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_000083_130 0.2290817122 - - hypothetical protein RCOM_0884570 [Ricinus communis]
18 Hb_007785_010 0.2292049542 - - glutathione peroxidase, putative [Ricinus communis]
19 Hb_000097_040 0.2313541049 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
20 Hb_000061_380 0.2338266589 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003384_070 Hb_003384_070 Hb_011382_050 Hb_011382_050 Hb_003384_070--Hb_011382_050 Hb_141142_010 Hb_141142_010 Hb_003384_070--Hb_141142_010 Hb_001351_040 Hb_001351_040 Hb_003384_070--Hb_001351_040 Hb_000315_030 Hb_000315_030 Hb_003384_070--Hb_000315_030 Hb_101089_010 Hb_101089_010 Hb_003384_070--Hb_101089_010 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_000017_150 Hb_000017_150 Hb_011382_050--Hb_000017_150 Hb_011382_050--Hb_101089_010 Hb_001103_040 Hb_001103_040 Hb_011382_050--Hb_001103_040 Hb_011382_050--Hb_141142_010 Hb_004611_060 Hb_004611_060 Hb_011382_050--Hb_004611_060 Hb_000844_010 Hb_000844_010 Hb_141142_010--Hb_000844_010 Hb_003175_020 Hb_003175_020 Hb_141142_010--Hb_003175_020 Hb_025194_010 Hb_025194_010 Hb_141142_010--Hb_025194_010 Hb_133636_010 Hb_133636_010 Hb_141142_010--Hb_133636_010 Hb_005157_010 Hb_005157_010 Hb_141142_010--Hb_005157_010 Hb_000977_010 Hb_000977_010 Hb_001351_040--Hb_000977_010 Hb_010398_010 Hb_010398_010 Hb_001351_040--Hb_010398_010 Hb_001351_040--Hb_000315_030 Hb_048848_010 Hb_048848_010 Hb_001351_040--Hb_048848_010 Hb_003640_030 Hb_003640_030 Hb_001351_040--Hb_003640_030 Hb_000061_380 Hb_000061_380 Hb_000315_030--Hb_000061_380 Hb_000315_030--Hb_003640_030 Hb_000640_150 Hb_000640_150 Hb_000315_030--Hb_000640_150 Hb_002477_220 Hb_002477_220 Hb_000315_030--Hb_002477_220 Hb_101089_010--Hb_000844_010 Hb_164010_090 Hb_164010_090 Hb_101089_010--Hb_164010_090 Hb_085327_010 Hb_085327_010 Hb_101089_010--Hb_085327_010 Hb_004341_010 Hb_004341_010 Hb_101089_010--Hb_004341_010 Hb_000189_120 Hb_000189_120 Hb_000803_100--Hb_000189_120 Hb_000657_030 Hb_000657_030 Hb_000803_100--Hb_000657_030 Hb_165130_010 Hb_165130_010 Hb_000803_100--Hb_165130_010 Hb_002739_060 Hb_002739_060 Hb_000803_100--Hb_002739_060 Hb_010253_020 Hb_010253_020 Hb_000803_100--Hb_010253_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.43291 12.6434 0.581858 5.34176 3.1968 2.44582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.2888 0.0921242

CAGE analysis