Hb_002477_220

Information

Type -
Description -
Location Contig2477: 164106-171627
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06650g
description hypothetical protein
nr
ID XP_006372972.1
description hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
swissprot
ID Q8VZH2
description Aminopeptidase M1 OS=Arabidopsis thaliana GN=APM1 PE=1 SV=1
trembl
ID B9MXW5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06650g PE=4 SV=1
Gene Ontology
ID GO:0008237
description aminopeptidase m1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25799: 169109-170140 , PASA_asmbl_25801: 171447-171722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_220 0.0 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
2 Hb_000283_150 0.1944459951 - - Ankyrin repeat family protein [Theobroma cacao]
3 Hb_007380_040 0.1974586526 - - receptor-kinase, putative [Ricinus communis]
4 Hb_000406_060 0.20978901 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
5 Hb_000022_170 0.2127658806 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
6 Hb_003640_030 0.213474032 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
7 Hb_001636_020 0.214291175 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
8 Hb_000209_110 0.2161775373 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
9 Hb_000362_110 0.2182248357 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
10 Hb_000544_100 0.2197850825 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
11 Hb_000315_030 0.2264101547 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_002780_060 0.2276256564 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001946_150 0.2323017635 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000036_050 0.2359704863 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
15 Hb_000940_150 0.23606506 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
16 Hb_002391_370 0.236401042 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
17 Hb_002903_130 0.2364510298 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_099496_010 0.2369010703 - - PREDICTED: uncharacterized protein LOC105138000 [Populus euphratica]
19 Hb_134894_010 0.2372173241 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
20 Hb_002827_020 0.2385123259 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002477_220 Hb_002477_220 Hb_000283_150 Hb_000283_150 Hb_002477_220--Hb_000283_150 Hb_007380_040 Hb_007380_040 Hb_002477_220--Hb_007380_040 Hb_000406_060 Hb_000406_060 Hb_002477_220--Hb_000406_060 Hb_000022_170 Hb_000022_170 Hb_002477_220--Hb_000022_170 Hb_003640_030 Hb_003640_030 Hb_002477_220--Hb_003640_030 Hb_001636_020 Hb_001636_020 Hb_002477_220--Hb_001636_020 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_000283_150--Hb_002827_020 Hb_000521_170 Hb_000521_170 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_020178_060 Hb_020178_060 Hb_000283_150--Hb_020178_060 Hb_004657_030 Hb_004657_030 Hb_007380_040--Hb_004657_030 Hb_007380_040--Hb_000406_060 Hb_000106_020 Hb_000106_020 Hb_007380_040--Hb_000106_020 Hb_003471_020 Hb_003471_020 Hb_007380_040--Hb_003471_020 Hb_000334_180 Hb_000334_180 Hb_007380_040--Hb_000334_180 Hb_004040_040 Hb_004040_040 Hb_007380_040--Hb_004040_040 Hb_006829_100 Hb_006829_100 Hb_000406_060--Hb_006829_100 Hb_002374_210 Hb_002374_210 Hb_000406_060--Hb_002374_210 Hb_001006_340 Hb_001006_340 Hb_000406_060--Hb_001006_340 Hb_000406_060--Hb_000106_020 Hb_003913_110 Hb_003913_110 Hb_000406_060--Hb_003913_110 Hb_002005_080 Hb_002005_080 Hb_000406_060--Hb_002005_080 Hb_000940_150 Hb_000940_150 Hb_000022_170--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_000022_170--Hb_000175_120 Hb_000631_110 Hb_000631_110 Hb_000022_170--Hb_000631_110 Hb_000950_060 Hb_000950_060 Hb_000022_170--Hb_000950_060 Hb_004218_250 Hb_004218_250 Hb_000022_170--Hb_004218_250 Hb_000800_110 Hb_000800_110 Hb_000022_170--Hb_000800_110 Hb_002903_130 Hb_002903_130 Hb_003640_030--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_003640_030--Hb_000362_110 Hb_003640_030--Hb_020178_060 Hb_003640_030--Hb_000283_150 Hb_000977_010 Hb_000977_010 Hb_003640_030--Hb_000977_010 Hb_000061_380 Hb_000061_380 Hb_003640_030--Hb_000061_380 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001427_070 Hb_001427_070 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31029 4.21993 0.982209 1.44722 2.582 5.06262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317025 0.349258 0.476521 14.4387 2.81653

CAGE analysis