Hb_000061_380

Information

Type -
Description -
Location Contig61: 327082-327876
Sequence    

Annotation

kegg
ID rcu:RCOM_1470860
description hypothetical protein
nr
ID XP_002514708.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q32KY6
description dCTP pyrophosphatase 1 OS=Bos taurus GN=DCTPP1 PE=2 SV=1
trembl
ID B9RLT9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1470860 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dctp pyrophosphatase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50945: 325878-326117 , PASA_asmbl_50946: 327244-327678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003640_030 0.1697348828 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
3 Hb_002903_130 0.1946597848 - - epoxide hydrolase, putative [Ricinus communis]
4 Hb_000283_150 0.2032211679 - - Ankyrin repeat family protein [Theobroma cacao]
5 Hb_048848_010 0.2055402957 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
6 Hb_000315_030 0.2087412606 - - carbohydrate binding protein, putative [Ricinus communis]
7 Hb_020178_060 0.2135181287 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
8 Hb_000097_040 0.2172102921 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
9 Hb_007785_010 0.2209811545 - - glutathione peroxidase, putative [Ricinus communis]
10 Hb_003581_080 0.2212534131 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
11 Hb_001091_030 0.2238896188 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
12 Hb_005839_100 0.229890368 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_003384_070 0.2338266589 - - PREDICTED: methylesterase 17-like [Populus euphratica]
14 Hb_001351_040 0.2348522457 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
15 Hb_000362_110 0.2370948797 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
16 Hb_001946_150 0.237506459 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000640_130 0.2378588168 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
18 Hb_134894_010 0.2391268872 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
19 Hb_006586_030 0.2453040037 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
20 Hb_031527_070 0.2520172454 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]

Gene co-expression network

sample Hb_000061_380 Hb_000061_380 Hb_003640_030 Hb_003640_030 Hb_000061_380--Hb_003640_030 Hb_002903_130 Hb_002903_130 Hb_000061_380--Hb_002903_130 Hb_000283_150 Hb_000283_150 Hb_000061_380--Hb_000283_150 Hb_048848_010 Hb_048848_010 Hb_000061_380--Hb_048848_010 Hb_000315_030 Hb_000315_030 Hb_000061_380--Hb_000315_030 Hb_020178_060 Hb_020178_060 Hb_000061_380--Hb_020178_060 Hb_003640_030--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_003640_030--Hb_000362_110 Hb_003640_030--Hb_020178_060 Hb_003640_030--Hb_000283_150 Hb_000977_010 Hb_000977_010 Hb_003640_030--Hb_000977_010 Hb_002903_130--Hb_000977_010 Hb_002903_130--Hb_020178_060 Hb_001946_150 Hb_001946_150 Hb_002903_130--Hb_001946_150 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_002903_130--Hb_000362_110 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_000283_150--Hb_002827_020 Hb_000521_170 Hb_000521_170 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_000283_150--Hb_020178_060 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_000362_090 Hb_000362_090 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_010398_010 Hb_010398_010 Hb_048848_010--Hb_010398_010 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_001351_040 Hb_001351_040 Hb_048848_010--Hb_001351_040 Hb_000315_030--Hb_001351_040 Hb_003384_070 Hb_003384_070 Hb_000315_030--Hb_003384_070 Hb_000315_030--Hb_003640_030 Hb_000640_150 Hb_000640_150 Hb_000315_030--Hb_000640_150 Hb_002477_220 Hb_002477_220 Hb_000315_030--Hb_002477_220 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_020178_060--Hb_000538_190 Hb_020178_060--Hb_000521_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37422 4.05188 1.15032 1.37746 3.31566 1.54374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.575488 0 0.115169 7.78758 0.127639

CAGE analysis