Hb_001091_030

Information

Type -
Description -
Location Contig1091: 27471-34564
Sequence    

Annotation

kegg
ID csv:101225033
description uncharacterized LOC101225033
nr
ID KFK43793.1
description hypothetical protein AALP_AA1G173500 [Arabis alpina]
swissprot
ID -
description -
trembl
ID A0A087HNU1
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1
Gene Ontology
ID GO:0005634
description hypothetical protein AALP_AA1G173500

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001091_030 0.0 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
2 Hb_048848_010 0.1493013752 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
3 Hb_001817_130 0.1777989122 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
4 Hb_010398_010 0.2009444694 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
5 Hb_159411_010 0.2012309852 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_000362_090 0.2120851614 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
7 Hb_007380_040 0.2124187876 - - receptor-kinase, putative [Ricinus communis]
8 Hb_000165_120 0.2124397141 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
9 Hb_001122_010 0.2124938101 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_000106_020 0.2143205322 - - PREDICTED: protein TOPLESS isoform X1 [Jatropha curcas]
11 Hb_001351_040 0.2169278653 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
12 Hb_001799_190 0.219951959 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
13 Hb_002375_050 0.220547336 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
14 Hb_000083_130 0.2213959746 - - hypothetical protein RCOM_0884570 [Ricinus communis]
15 Hb_009913_010 0.2231131712 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_000061_380 0.2238896188 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010270_010 0.2247002541 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_002471_020 0.2262148835 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
19 Hb_001251_060 0.2294780029 - - aldo/keto reductase AKR [Manihot esculenta]
20 Hb_005839_100 0.2296146902 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001091_030 Hb_001091_030 Hb_048848_010 Hb_048848_010 Hb_001091_030--Hb_048848_010 Hb_001817_130 Hb_001817_130 Hb_001091_030--Hb_001817_130 Hb_010398_010 Hb_010398_010 Hb_001091_030--Hb_010398_010 Hb_159411_010 Hb_159411_010 Hb_001091_030--Hb_159411_010 Hb_000362_090 Hb_000362_090 Hb_001091_030--Hb_000362_090 Hb_007380_040 Hb_007380_040 Hb_001091_030--Hb_007380_040 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_048848_010--Hb_000362_090 Hb_048848_010--Hb_010398_010 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_001351_040 Hb_001351_040 Hb_048848_010--Hb_001351_040 Hb_002471_020 Hb_002471_020 Hb_001817_130--Hb_002471_020 Hb_001114_020 Hb_001114_020 Hb_001817_130--Hb_001114_020 Hb_000165_120 Hb_000165_120 Hb_001817_130--Hb_000165_120 Hb_087587_010 Hb_087587_010 Hb_001817_130--Hb_087587_010 Hb_003914_030 Hb_003914_030 Hb_001817_130--Hb_003914_030 Hb_001608_020 Hb_001608_020 Hb_010398_010--Hb_001608_020 Hb_010398_010--Hb_000362_090 Hb_010398_010--Hb_001351_040 Hb_000120_970 Hb_000120_970 Hb_010398_010--Hb_000120_970 Hb_000107_560 Hb_000107_560 Hb_010398_010--Hb_000107_560 Hb_000197_230 Hb_000197_230 Hb_159411_010--Hb_000197_230 Hb_005880_010 Hb_005880_010 Hb_159411_010--Hb_005880_010 Hb_001369_160 Hb_001369_160 Hb_159411_010--Hb_001369_160 Hb_000083_130 Hb_000083_130 Hb_159411_010--Hb_000083_130 Hb_146510_010 Hb_146510_010 Hb_159411_010--Hb_146510_010 Hb_001488_280 Hb_001488_280 Hb_159411_010--Hb_001488_280 Hb_009193_110 Hb_009193_110 Hb_000362_090--Hb_009193_110 Hb_004800_240 Hb_004800_240 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_089100_040 Hb_089100_040 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_148682_010 Hb_148682_010 Hb_000362_090--Hb_148682_010 Hb_004657_030 Hb_004657_030 Hb_007380_040--Hb_004657_030 Hb_000406_060 Hb_000406_060 Hb_007380_040--Hb_000406_060 Hb_000106_020 Hb_000106_020 Hb_007380_040--Hb_000106_020 Hb_003471_020 Hb_003471_020 Hb_007380_040--Hb_003471_020 Hb_000334_180 Hb_000334_180 Hb_007380_040--Hb_000334_180 Hb_004040_040 Hb_004040_040 Hb_007380_040--Hb_004040_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09669 1.77883 0.649396 0.602858 0.653604 0.323582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0587511 1.95973 0.39218

CAGE analysis