Hb_159411_010

Information

Type -
Description -
Location Contig159411: 13016-24818
Sequence    

Annotation

kegg
ID rcu:RCOM_0137140
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012073972.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9SJG3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0137140 PE=4 SV=1
Gene Ontology
ID GO:0003824
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14174: 13364-13721 , PASA_asmbl_14175: 13871-14371 , PASA_asmbl_14176: 14564-14723 , PASA_asmbl_14177: 14749-14985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159411_010 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_000197_230 0.1374288557 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
3 Hb_005880_010 0.1447463115 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
4 Hb_001369_160 0.1453298802 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_000083_130 0.1497247502 - - hypothetical protein RCOM_0884570 [Ricinus communis]
6 Hb_146510_010 0.1547718219 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
7 Hb_001488_280 0.1584699572 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
8 Hb_010605_010 0.1586749915 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
9 Hb_001625_010 0.1604338566 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
10 Hb_000189_470 0.1674008472 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
11 Hb_115513_040 0.1691997362 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002781_010 0.1692730462 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_002685_030 0.1707559919 - - PREDICTED: protein SMG7L [Jatropha curcas]
14 Hb_002471_020 0.1711148642 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
15 Hb_169051_010 0.172724157 - - JHL06B08.1 [Jatropha curcas]
16 Hb_087587_010 0.1732388105 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_000778_020 0.1740328375 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
18 Hb_008175_030 0.17522024 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
19 Hb_001900_060 0.176433359 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
20 Hb_002739_060 0.1778690213 - - -

Gene co-expression network

sample Hb_159411_010 Hb_159411_010 Hb_000197_230 Hb_000197_230 Hb_159411_010--Hb_000197_230 Hb_005880_010 Hb_005880_010 Hb_159411_010--Hb_005880_010 Hb_001369_160 Hb_001369_160 Hb_159411_010--Hb_001369_160 Hb_000083_130 Hb_000083_130 Hb_159411_010--Hb_000083_130 Hb_146510_010 Hb_146510_010 Hb_159411_010--Hb_146510_010 Hb_001488_280 Hb_001488_280 Hb_159411_010--Hb_001488_280 Hb_001071_060 Hb_001071_060 Hb_000197_230--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_000197_230--Hb_001832_210 Hb_010605_010 Hb_010605_010 Hb_000197_230--Hb_010605_010 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_001391_100 Hb_001391_100 Hb_000197_230--Hb_001391_100 Hb_008175_030 Hb_008175_030 Hb_005880_010--Hb_008175_030 Hb_005880_010--Hb_002833_020 Hb_002660_040 Hb_002660_040 Hb_005880_010--Hb_002660_040 Hb_000778_020 Hb_000778_020 Hb_005880_010--Hb_000778_020 Hb_000261_320 Hb_000261_320 Hb_005880_010--Hb_000261_320 Hb_005880_010--Hb_001369_160 Hb_000120_310 Hb_000120_310 Hb_001369_160--Hb_000120_310 Hb_001856_170 Hb_001856_170 Hb_001369_160--Hb_001856_170 Hb_002662_090 Hb_002662_090 Hb_001369_160--Hb_002662_090 Hb_001596_020 Hb_001596_020 Hb_001369_160--Hb_001596_020 Hb_002447_150 Hb_002447_150 Hb_001369_160--Hb_002447_150 Hb_003894_100 Hb_003894_100 Hb_001369_160--Hb_003894_100 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_001900_060 Hb_001900_060 Hb_000083_130--Hb_001900_060 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230 Hb_169051_010 Hb_169051_010 Hb_146510_010--Hb_169051_010 Hb_014720_030 Hb_014720_030 Hb_146510_010--Hb_014720_030 Hb_001446_060 Hb_001446_060 Hb_146510_010--Hb_001446_060 Hb_003125_180 Hb_003125_180 Hb_146510_010--Hb_003125_180 Hb_000000_120 Hb_000000_120 Hb_146510_010--Hb_000000_120 Hb_001898_020 Hb_001898_020 Hb_146510_010--Hb_001898_020 Hb_001488_280--Hb_000120_310 Hb_009898_030 Hb_009898_030 Hb_001488_280--Hb_009898_030 Hb_001488_280--Hb_002833_020 Hb_000417_280 Hb_000417_280 Hb_001488_280--Hb_000417_280 Hb_000574_370 Hb_000574_370 Hb_001488_280--Hb_000574_370 Hb_001488_280--Hb_005880_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6784 5.07581 1.88402 2.63485 0.658565 1.68237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20994 0.0795523 0 5.12996 2.04005

CAGE analysis