Hb_000413_230

Information

Type -
Description -
Location Contig413: 173342-175122
Sequence    

Annotation

kegg
ID rcu:RCOM_0906500
description Thioredoxin H-type, putative
nr
ID AAD33596.1
description thioredoxin h [Hevea brasiliensis]
swissprot
ID Q8LDI5
description Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana GN=CXXS1 PE=2 SV=2
trembl
ID Q9XF70
description Thioredoxin h OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like protein cxxs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40938: 173526-175105 , PASA_asmbl_40939: 173717-174301 , PASA_asmbl_40940: 173633-174968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_230 0.0 - - thioredoxin h [Hevea brasiliensis]
2 Hb_000083_130 0.1658441674 - - hypothetical protein RCOM_0884570 [Ricinus communis]
3 Hb_003972_040 0.1765154504 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
4 Hb_000152_460 0.1888952818 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
5 Hb_034337_010 0.1908973613 - - vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_001900_060 0.1924163215 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
7 Hb_002928_120 0.1924439497 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
8 Hb_002119_070 0.1937407868 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_001625_010 0.1954089984 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
10 Hb_004316_030 0.1980093983 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
11 Hb_048643_010 0.1986286894 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_028115_010 0.1988596235 - - conserved hypothetical protein [Ricinus communis]
13 Hb_029977_050 0.2015067295 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
14 Hb_001021_030 0.2114573555 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_165130_010 0.2120126552 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
16 Hb_001814_080 0.2128883898 - - PREDICTED: oleosin 1-like [Jatropha curcas]
17 Hb_000362_110 0.2146831216 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
18 Hb_003576_050 0.2151815251 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_000818_080 0.2162493862 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
20 Hb_000120_230 0.2196685981 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]

Gene co-expression network

sample Hb_000413_230 Hb_000413_230 Hb_000083_130 Hb_000083_130 Hb_000413_230--Hb_000083_130 Hb_003972_040 Hb_003972_040 Hb_000413_230--Hb_003972_040 Hb_000152_460 Hb_000152_460 Hb_000413_230--Hb_000152_460 Hb_034337_010 Hb_034337_010 Hb_000413_230--Hb_034337_010 Hb_001900_060 Hb_001900_060 Hb_000413_230--Hb_001900_060 Hb_002928_120 Hb_002928_120 Hb_000413_230--Hb_002928_120 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_000083_130--Hb_001900_060 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000778_020 Hb_000778_020 Hb_000083_130--Hb_000778_020 Hb_034280_010 Hb_034280_010 Hb_003972_040--Hb_034280_010 Hb_028115_010 Hb_028115_010 Hb_003972_040--Hb_028115_010 Hb_010872_040 Hb_010872_040 Hb_003972_040--Hb_010872_040 Hb_173741_010 Hb_173741_010 Hb_003972_040--Hb_173741_010 Hb_000679_200 Hb_000679_200 Hb_003972_040--Hb_000679_200 Hb_048643_010 Hb_048643_010 Hb_000152_460--Hb_048643_010 Hb_000025_400 Hb_000025_400 Hb_000152_460--Hb_000025_400 Hb_000152_460--Hb_002928_120 Hb_000152_460--Hb_001900_060 Hb_000152_460--Hb_000083_130 Hb_000000_110 Hb_000000_110 Hb_000152_460--Hb_000000_110 Hb_001544_080 Hb_001544_080 Hb_034337_010--Hb_001544_080 Hb_029977_050 Hb_029977_050 Hb_034337_010--Hb_029977_050 Hb_101089_010 Hb_101089_010 Hb_034337_010--Hb_101089_010 Hb_165130_010 Hb_165130_010 Hb_034337_010--Hb_165130_010 Hb_011716_110 Hb_011716_110 Hb_034337_010--Hb_011716_110 Hb_000702_060 Hb_000702_060 Hb_001900_060--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_001900_060--Hb_000684_360 Hb_169051_010 Hb_169051_010 Hb_001900_060--Hb_169051_010 Hb_000362_110 Hb_000362_110 Hb_001900_060--Hb_000362_110 Hb_000793_040 Hb_000793_040 Hb_001900_060--Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66647 19.5204 0.813213 24.3796 2.25252 9.07521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4119 1.11046 1.82543 30.9695 3.57087

CAGE analysis