Hb_000152_460

Information

Type -
Description -
Location Contig152: 403853-404878
Sequence    

Annotation

kegg
ID tcc:TCM_014962
description EXORDIUM like 3
nr
ID XP_012090412.1
description PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
swissprot
ID Q9FHM9
description Protein EXORDIUM-like 3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1
trembl
ID A0A067JHX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26229 PE=4 SV=1
Gene Ontology
ID GO:0009505
description protein exordium-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12999: 403804-405450
cDNA
(Sanger)
(ID:Location)		 003_J03.ab1: 403804-404571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_460 0.0 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
2 Hb_048643_010 0.1296738381 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000025_400 0.1694411119 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
4 Hb_002928_120 0.1702920327 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
5 Hb_001900_060 0.1738523524 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
6 Hb_000083_130 0.178071903 - - hypothetical protein RCOM_0884570 [Ricinus communis]
7 Hb_000000_110 0.1811013505 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
8 Hb_010253_020 0.1843321497 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_000413_230 0.1888952818 - - thioredoxin h [Hevea brasiliensis]
10 Hb_001814_080 0.1921376848 - - PREDICTED: oleosin 1-like [Jatropha curcas]
11 Hb_004531_110 0.1964328219 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
12 Hb_010270_010 0.200386348 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_000818_080 0.2020414678 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
14 Hb_000000_120 0.2021484436 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
15 Hb_001832_210 0.2048299067 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_001021_030 0.2055572548 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_003506_020 0.208037291 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
18 Hb_002122_080 0.209324379 - - -
19 Hb_028001_020 0.2098303329 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
20 Hb_000189_120 0.2134912684 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_460 Hb_000152_460 Hb_048643_010 Hb_048643_010 Hb_000152_460--Hb_048643_010 Hb_000025_400 Hb_000025_400 Hb_000152_460--Hb_000025_400 Hb_002928_120 Hb_002928_120 Hb_000152_460--Hb_002928_120 Hb_001900_060 Hb_001900_060 Hb_000152_460--Hb_001900_060 Hb_000083_130 Hb_000083_130 Hb_000152_460--Hb_000083_130 Hb_000000_110 Hb_000000_110 Hb_000152_460--Hb_000000_110 Hb_004531_110 Hb_004531_110 Hb_048643_010--Hb_004531_110 Hb_000818_080 Hb_000818_080 Hb_048643_010--Hb_000818_080 Hb_048643_010--Hb_000000_110 Hb_048643_010--Hb_002928_120 Hb_048643_010--Hb_000025_400 Hb_000465_260 Hb_000465_260 Hb_000025_400--Hb_000465_260 Hb_008468_030 Hb_008468_030 Hb_000025_400--Hb_008468_030 Hb_000056_280 Hb_000056_280 Hb_000025_400--Hb_000056_280 Hb_000025_400--Hb_002928_120 Hb_005016_020 Hb_005016_020 Hb_000025_400--Hb_005016_020 Hb_004631_110 Hb_004631_110 Hb_000025_400--Hb_004631_110 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_000702_060 Hb_000702_060 Hb_001900_060--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_001900_060--Hb_000684_360 Hb_169051_010 Hb_169051_010 Hb_001900_060--Hb_169051_010 Hb_000362_110 Hb_000362_110 Hb_001900_060--Hb_000362_110 Hb_001900_060--Hb_000793_040 Hb_001900_060--Hb_000083_130 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000778_020 Hb_000778_020 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230 Hb_000000_110--Hb_005016_020 Hb_001832_210 Hb_001832_210 Hb_000000_110--Hb_001832_210 Hb_000220_080 Hb_000220_080 Hb_000000_110--Hb_000220_080 Hb_001178_080 Hb_001178_080 Hb_000000_110--Hb_001178_080 Hb_000000_120 Hb_000000_120 Hb_000000_110--Hb_000000_120 Hb_002685_030 Hb_002685_030 Hb_000000_110--Hb_002685_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9143 72.7057 10.7928 109.415 23.0686 9.13785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6335 1.38987 5.19616 96.3408 12.1852

CAGE analysis