Hb_000362_110

Information

Type -
Description -
Location Contig362: 117047-117457
Sequence    

Annotation

kegg
ID dosa:Os02t0247800-01
description Os02g0247800; Similar to calcium ion binding protein.
nr
ID XP_010277718.1
description PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A072V9A0
description Calcium ion-binding protein, putative OS=Medicago truncatula GN=MTR_2g078250 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37203: 91202-117388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_110 0.0 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
2 Hb_006717_070 0.1234403828 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
3 Hb_000395_220 0.1249188271 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_001780_150 0.1260032017 - - ceramidase, putative [Ricinus communis]
5 Hb_001799_190 0.1265370671 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
6 Hb_007426_140 0.1282074337 - - ornithine aminotransferase, putative [Ricinus communis]
7 Hb_000977_010 0.1352502939 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
8 Hb_001900_060 0.1360516959 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
9 Hb_001322_180 0.1369000419 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_001946_150 0.1377701089 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000313_370 0.1422216911 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000130_060 0.1447185705 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
13 Hb_002903_130 0.1524044473 - - epoxide hydrolase, putative [Ricinus communis]
14 Hb_000022_180 0.1549143872 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_003517_020 0.1552742807 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
16 Hb_127886_010 0.1556792248 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_003626_040 0.1559634194 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
18 Hb_003640_030 0.157839304 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
19 Hb_033772_070 0.1588795642 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
20 Hb_001699_150 0.1597290824 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]

Gene co-expression network

sample Hb_000362_110 Hb_000362_110 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_001799_190 Hb_001799_190 Hb_000362_110--Hb_001799_190 Hb_007426_140 Hb_007426_140 Hb_000362_110--Hb_007426_140 Hb_000977_010 Hb_000977_010 Hb_000362_110--Hb_000977_010 Hb_127886_010 Hb_127886_010 Hb_006717_070--Hb_127886_010 Hb_009732_020 Hb_009732_020 Hb_006717_070--Hb_009732_020 Hb_003626_040 Hb_003626_040 Hb_006717_070--Hb_003626_040 Hb_006717_070--Hb_000395_220 Hb_003813_120 Hb_003813_120 Hb_006717_070--Hb_003813_120 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_000395_220--Hb_009732_020 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_001780_150--Hb_011287_010 Hb_075315_010 Hb_075315_010 Hb_001780_150--Hb_075315_010 Hb_001780_150--Hb_007426_140 Hb_002851_010 Hb_002851_010 Hb_001780_150--Hb_002851_010 Hb_000227_040 Hb_000227_040 Hb_001780_150--Hb_000227_040 Hb_001699_150 Hb_001699_150 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001675_010 Hb_001675_010 Hb_001799_190--Hb_001675_010 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_002903_130 Hb_002903_130 Hb_000977_010--Hb_002903_130 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73738 29.2996 9.34667 17.7149 9.86429 13.1379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9746 3.41919 1.67928 48.2316 7.6454

CAGE analysis