Hb_001799_190

Information

Type -
Description -
Location Contig1799: 182547-189242
Sequence    

Annotation

kegg
ID rcu:RCOM_1608270
description hypothetical protein
nr
ID XP_012083698.1
description PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14629 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17396: 182567-188221 , PASA_asmbl_17399: 184545-184924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001799_190 0.0 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
2 Hb_001699_150 0.0986663563 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
3 Hb_001414_040 0.107619504 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
4 Hb_001675_010 0.1084169104 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
5 Hb_000395_220 0.1129318802 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_001322_180 0.1161695177 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
7 Hb_002524_020 0.1185762559 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
8 Hb_003544_070 0.1190118312 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003849_240 0.122204461 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_007765_030 0.1263525314 - - PREDICTED: neutral ceramidase [Jatropha curcas]
11 Hb_000362_110 0.1265370671 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
12 Hb_000371_060 0.128833483 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
13 Hb_000866_090 0.1298796618 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
14 Hb_148682_010 0.1312750825 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
15 Hb_002016_060 0.1321357263 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
16 Hb_007426_140 0.1324514045 - - ornithine aminotransferase, putative [Ricinus communis]
17 Hb_001031_090 0.137588641 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
18 Hb_000009_120 0.1380306685 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
19 Hb_000580_050 0.1399135135 - - -
20 Hb_062416_010 0.1407157328 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]

Gene co-expression network

sample Hb_001799_190 Hb_001799_190 Hb_001699_150 Hb_001699_150 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001675_010 Hb_001675_010 Hb_001799_190--Hb_001675_010 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020 Hb_004126_080 Hb_004126_080 Hb_001699_150--Hb_004126_080 Hb_148682_010 Hb_148682_010 Hb_001699_150--Hb_148682_010 Hb_001699_150--Hb_001675_010 Hb_002016_060 Hb_002016_060 Hb_001699_150--Hb_002016_060 Hb_003544_070 Hb_003544_070 Hb_001699_150--Hb_003544_070 Hb_006907_140 Hb_006907_140 Hb_001414_040--Hb_006907_140 Hb_000371_060 Hb_000371_060 Hb_001414_040--Hb_000371_060 Hb_007765_030 Hb_007765_030 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001341_160 Hb_001341_160 Hb_001414_040--Hb_001341_160 Hb_001259_120 Hb_001259_120 Hb_001414_040--Hb_001259_120 Hb_001675_010--Hb_002524_020 Hb_001675_010--Hb_000371_060 Hb_001675_010--Hb_003544_070 Hb_002781_010 Hb_002781_010 Hb_001675_010--Hb_002781_010 Hb_007426_140 Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_000834_230 Hb_000834_230 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_002027_190 Hb_002027_190 Hb_001322_180--Hb_002027_190 Hb_002524_020--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_062416_010 Hb_062416_010 Hb_002524_020--Hb_062416_010 Hb_002524_020--Hb_001414_040 Hb_001268_310 Hb_001268_310 Hb_002524_020--Hb_001268_310 Hb_002524_020--Hb_007765_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.694 44.9768 15.3942 22.1728 12.8901 10.8572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.53464 6.62363 3.5373 49.2307 13.0441

CAGE analysis