Hb_002781_010

Information

Type transcription factor
Description TF Family: LUG
Location Contig2781: 2899-14706
Sequence    

Annotation

kegg
ID rcu:RCOM_1720840
description WD-repeat protein, putative
nr
ID XP_012085117.1
description PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067K2A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17553 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29019: 9053-14145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002781_010 0.0 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
2 Hb_001675_010 0.1236392832 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
3 Hb_001122_010 0.1295524558 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_004586_240 0.1375491627 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
5 Hb_001625_010 0.1380862671 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
6 Hb_010270_010 0.1396117414 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_000840_070 0.1404548879 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_001369_160 0.1433726914 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
9 Hb_002524_020 0.1434999508 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
10 Hb_000270_350 0.1485331683 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
11 Hb_004631_110 0.1486666057 - - ring finger protein, putative [Ricinus communis]
12 Hb_002471_140 0.1513884006 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
13 Hb_001195_350 0.1518684512 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
14 Hb_008667_060 0.1524843019 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
15 Hb_001277_040 0.1571823779 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
16 Hb_001799_190 0.1597641877 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
17 Hb_000345_340 0.1605595522 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
18 Hb_000371_060 0.1627761323 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
19 Hb_000216_020 0.1632838165 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
20 Hb_001699_150 0.1639096257 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]

Gene co-expression network

sample Hb_002781_010 Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_002781_010--Hb_001675_010 Hb_001122_010 Hb_001122_010 Hb_002781_010--Hb_001122_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_001625_010 Hb_001625_010 Hb_002781_010--Hb_001625_010 Hb_010270_010 Hb_010270_010 Hb_002781_010--Hb_010270_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070 Hb_001699_150 Hb_001699_150 Hb_001675_010--Hb_001699_150 Hb_002524_020 Hb_002524_020 Hb_001675_010--Hb_002524_020 Hb_001799_190 Hb_001799_190 Hb_001675_010--Hb_001799_190 Hb_000371_060 Hb_000371_060 Hb_001675_010--Hb_000371_060 Hb_003544_070 Hb_003544_070 Hb_001675_010--Hb_003544_070 Hb_001122_010--Hb_010270_010 Hb_000638_150 Hb_000638_150 Hb_001122_010--Hb_000638_150 Hb_009913_010 Hb_009913_010 Hb_001122_010--Hb_009913_010 Hb_000256_120 Hb_000256_120 Hb_001122_010--Hb_000256_120 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010 Hb_005504_030 Hb_005504_030 Hb_004586_240--Hb_005504_030 Hb_000009_140 Hb_000009_140 Hb_004586_240--Hb_000009_140 Hb_001856_170 Hb_001856_170 Hb_004586_240--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_004586_240--Hb_000120_310 Hb_001369_160 Hb_001369_160 Hb_004586_240--Hb_001369_160 Hb_001596_020 Hb_001596_020 Hb_004586_240--Hb_001596_020 Hb_000083_130 Hb_000083_130 Hb_001625_010--Hb_000083_130 Hb_001625_010--Hb_001799_190 Hb_169051_010 Hb_169051_010 Hb_001625_010--Hb_169051_010 Hb_000216_020 Hb_000216_020 Hb_001625_010--Hb_000216_020 Hb_003398_070 Hb_003398_070 Hb_001625_010--Hb_003398_070 Hb_010270_010--Hb_039342_010 Hb_010270_010--Hb_001675_010 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_004631_110 Hb_004631_110 Hb_000840_070--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_000840_070--Hb_001195_350 Hb_002471_140 Hb_002471_140 Hb_000840_070--Hb_002471_140 Hb_000840_070--Hb_001856_170 Hb_000465_260 Hb_000465_260 Hb_000840_070--Hb_000465_260 Hb_000840_070--Hb_000009_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.46868 12.8191 4.884 6.92395 0.544775 2.88635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.768708 1.41142 0.717971 9.72879 2.48754

CAGE analysis