Hb_000256_120

Information

Type -
Description -
Location Contig256: 185278-188529
Sequence    

Annotation

kegg
ID rcu:RCOM_0922310
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.30)
nr
ID XP_012076465.1
description PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
swissprot
ID Q0V7T5
description Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1
trembl
ID A0A067KBM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07113 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g80640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26686: 185220-187312 , PASA_asmbl_26687: 188154-188298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_120 0.0 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
2 Hb_000638_150 0.1704295249 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_001122_010 0.1744932694 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_010270_010 0.1856139833 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_009710_020 0.1865321498 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
6 Hb_002781_010 0.1881948899 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_000242_030 0.1889320253 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
8 Hb_084513_010 0.1906986416 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
9 Hb_001277_040 0.1961696782 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
10 Hb_027136_040 0.1999146414 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
11 Hb_000661_280 0.2074873637 - - PREDICTED: protein TRAUCO [Jatropha curcas]
12 Hb_001195_420 0.2076630608 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
13 Hb_002687_060 0.2132576896 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_002740_040 0.2141174707 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
15 Hb_114943_020 0.2155221882 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
16 Hb_025964_040 0.2167905159 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
17 Hb_004837_050 0.220815455 - - -
18 Hb_005833_030 0.2240715346 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
19 Hb_000070_030 0.2240959666 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
20 Hb_087587_010 0.2244875799 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_000256_120 Hb_000256_120 Hb_000638_150 Hb_000638_150 Hb_000256_120--Hb_000638_150 Hb_001122_010 Hb_001122_010 Hb_000256_120--Hb_001122_010 Hb_010270_010 Hb_010270_010 Hb_000256_120--Hb_010270_010 Hb_009710_020 Hb_009710_020 Hb_000256_120--Hb_009710_020 Hb_002781_010 Hb_002781_010 Hb_000256_120--Hb_002781_010 Hb_000242_030 Hb_000242_030 Hb_000256_120--Hb_000242_030 Hb_000638_150--Hb_001122_010 Hb_000661_280 Hb_000661_280 Hb_000638_150--Hb_000661_280 Hb_001277_040 Hb_001277_040 Hb_000638_150--Hb_001277_040 Hb_000638_150--Hb_010270_010 Hb_000638_150--Hb_009710_020 Hb_001122_010--Hb_010270_010 Hb_001122_010--Hb_002781_010 Hb_009913_010 Hb_009913_010 Hb_001122_010--Hb_009913_010 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010 Hb_010270_010--Hb_039342_010 Hb_010270_010--Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_010270_010--Hb_001675_010 Hb_001799_190 Hb_001799_190 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_002863_100 Hb_002863_100 Hb_009710_020--Hb_002863_100 Hb_025964_040 Hb_025964_040 Hb_009710_020--Hb_025964_040 Hb_012539_030 Hb_012539_030 Hb_009710_020--Hb_012539_030 Hb_001622_010 Hb_001622_010 Hb_009710_020--Hb_001622_010 Hb_002781_010--Hb_001675_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_001625_010 Hb_001625_010 Hb_002781_010--Hb_001625_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070 Hb_004837_050 Hb_004837_050 Hb_000242_030--Hb_004837_050 Hb_000045_160 Hb_000045_160 Hb_000242_030--Hb_000045_160 Hb_000242_030--Hb_025964_040 Hb_000470_110 Hb_000470_110 Hb_000242_030--Hb_000470_110 Hb_000523_030 Hb_000523_030 Hb_000242_030--Hb_000523_030 Hb_000631_090 Hb_000631_090 Hb_000242_030--Hb_000631_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50448 3.7904 3.80974 4.65521 0.189632 1.89863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153165 0.20085 0.569497 4.44783 1.48049

CAGE analysis