Hb_009710_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig9710: 9558-12517
Sequence    

Annotation

kegg
ID rcu:RCOM_0897880
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073448.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID Q8RXS5
description Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2
trembl
ID A0A067KLU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06173 PE=4 SV=1
Gene Ontology
ID GO:0032550
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009710_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_002863_100 0.1467033149 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
3 Hb_000256_120 0.1865321498 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
4 Hb_025964_040 0.2110807629 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
5 Hb_012539_030 0.2148367199 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
6 Hb_001622_010 0.2158525866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000638_150 0.2164793614 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
8 Hb_001817_130 0.2256103181 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
9 Hb_000453_150 0.2285320124 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_001122_010 0.2354353785 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_028472_010 0.2372499461 - - glycosyltransferase, putative [Ricinus communis]
12 Hb_001277_040 0.241161604 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
13 Hb_000157_200 0.2430203695 - - PREDICTED: putative disease resistance protein RGA4 isoform X3 [Eucalyptus grandis]
14 Hb_002471_020 0.24428179 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
15 Hb_005464_030 0.2457411832 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000242_030 0.2492258198 - - PREDICTED: uncharacterized protein LOC102608003 [Citrus sinensis]
17 Hb_007846_040 0.2498816806 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
18 Hb_087587_010 0.2512650186 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_133748_010 0.2516236398 - - -
20 Hb_002781_010 0.257481703 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009710_020 Hb_009710_020 Hb_002863_100 Hb_002863_100 Hb_009710_020--Hb_002863_100 Hb_000256_120 Hb_000256_120 Hb_009710_020--Hb_000256_120 Hb_025964_040 Hb_025964_040 Hb_009710_020--Hb_025964_040 Hb_012539_030 Hb_012539_030 Hb_009710_020--Hb_012539_030 Hb_001622_010 Hb_001622_010 Hb_009710_020--Hb_001622_010 Hb_000638_150 Hb_000638_150 Hb_009710_020--Hb_000638_150 Hb_000157_200 Hb_000157_200 Hb_002863_100--Hb_000157_200 Hb_000453_150 Hb_000453_150 Hb_002863_100--Hb_000453_150 Hb_002863_100--Hb_001622_010 Hb_004097_120 Hb_004097_120 Hb_002863_100--Hb_004097_120 Hb_133748_010 Hb_133748_010 Hb_002863_100--Hb_133748_010 Hb_000256_120--Hb_000638_150 Hb_001122_010 Hb_001122_010 Hb_000256_120--Hb_001122_010 Hb_010270_010 Hb_010270_010 Hb_000256_120--Hb_010270_010 Hb_002781_010 Hb_002781_010 Hb_000256_120--Hb_002781_010 Hb_000242_030 Hb_000242_030 Hb_000256_120--Hb_000242_030 Hb_025964_040--Hb_000242_030 Hb_007777_010 Hb_007777_010 Hb_025964_040--Hb_007777_010 Hb_001114_020 Hb_001114_020 Hb_025964_040--Hb_001114_020 Hb_087587_010 Hb_087587_010 Hb_025964_040--Hb_087587_010 Hb_000045_160 Hb_000045_160 Hb_025964_040--Hb_000045_160 Hb_000631_090 Hb_000631_090 Hb_025964_040--Hb_000631_090 Hb_002471_020 Hb_002471_020 Hb_012539_030--Hb_002471_020 Hb_000189_470 Hb_000189_470 Hb_012539_030--Hb_000189_470 Hb_001492_040 Hb_001492_040 Hb_012539_030--Hb_001492_040 Hb_012539_030--Hb_087587_010 Hb_122273_020 Hb_122273_020 Hb_012539_030--Hb_122273_020 Hb_159411_010 Hb_159411_010 Hb_012539_030--Hb_159411_010 Hb_005464_030 Hb_005464_030 Hb_001622_010--Hb_005464_030 Hb_002196_010 Hb_002196_010 Hb_001622_010--Hb_002196_010 Hb_010531_050 Hb_010531_050 Hb_001622_010--Hb_010531_050 Hb_001865_040 Hb_001865_040 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_000638_150--Hb_001122_010 Hb_000661_280 Hb_000661_280 Hb_000638_150--Hb_000661_280 Hb_001277_040 Hb_001277_040 Hb_000638_150--Hb_001277_040 Hb_000638_150--Hb_010270_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1907 22.0095 10.0859 9.93993 0.980278 11.7025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.175202 0.0689277 2.58336 10.1369 6.99763

CAGE analysis