Hb_005464_030

Information

Type -
Description -
Location Contig5464: 53452-69843
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005464_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001622_010 0.1250993872 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002196_010 0.1613157764 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
4 Hb_001865_040 0.1829290814 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_002027_380 0.1830258798 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
6 Hb_010531_050 0.1873513073 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
7 Hb_002326_070 0.1925150121 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
8 Hb_000836_370 0.2080408292 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
9 Hb_001817_130 0.2104686094 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
10 Hb_000438_150 0.2148300063 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
11 Hb_003914_030 0.2160936928 - - -
12 Hb_002232_150 0.2195360323 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
13 Hb_003640_020 0.2200360533 - - pelota, putative [Ricinus communis]
14 Hb_005054_310 0.2236467163 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
15 Hb_080147_080 0.2243610596 - - peroxiredoxin, putative [Ricinus communis]
16 Hb_025964_040 0.2248368052 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
17 Hb_005000_300 0.2256195724 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
18 Hb_087587_010 0.2268696935 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_001484_100 0.2304845293 - - PREDICTED: cyanate hydratase [Jatropha curcas]
20 Hb_178127_010 0.2325647585 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]

Gene co-expression network

sample Hb_005464_030 Hb_005464_030 Hb_001622_010 Hb_001622_010 Hb_005464_030--Hb_001622_010 Hb_002196_010 Hb_002196_010 Hb_005464_030--Hb_002196_010 Hb_001865_040 Hb_001865_040 Hb_005464_030--Hb_001865_040 Hb_002027_380 Hb_002027_380 Hb_005464_030--Hb_002027_380 Hb_010531_050 Hb_010531_050 Hb_005464_030--Hb_010531_050 Hb_002326_070 Hb_002326_070 Hb_005464_030--Hb_002326_070 Hb_001622_010--Hb_002196_010 Hb_001622_010--Hb_010531_050 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_002196_010--Hb_001865_040 Hb_009393_200 Hb_009393_200 Hb_002196_010--Hb_009393_200 Hb_005333_030 Hb_005333_030 Hb_001865_040--Hb_005333_030 Hb_000336_270 Hb_000336_270 Hb_001865_040--Hb_000336_270 Hb_002742_080 Hb_002742_080 Hb_001865_040--Hb_002742_080 Hb_001882_040 Hb_001882_040 Hb_001865_040--Hb_001882_040 Hb_002783_010 Hb_002783_010 Hb_001865_040--Hb_002783_010 Hb_002081_120 Hb_002081_120 Hb_001865_040--Hb_002081_120 Hb_003640_020 Hb_003640_020 Hb_002027_380--Hb_003640_020 Hb_130389_010 Hb_130389_010 Hb_002027_380--Hb_130389_010 Hb_000120_420 Hb_000120_420 Hb_002027_380--Hb_000120_420 Hb_000836_370 Hb_000836_370 Hb_002027_380--Hb_000836_370 Hb_005203_020 Hb_005203_020 Hb_002027_380--Hb_005203_020 Hb_001369_770 Hb_001369_770 Hb_002027_380--Hb_001369_770 Hb_000997_410 Hb_000997_410 Hb_010531_050--Hb_000997_410 Hb_031527_070 Hb_031527_070 Hb_010531_050--Hb_031527_070 Hb_114984_010 Hb_114984_010 Hb_010531_050--Hb_114984_010 Hb_000984_250 Hb_000984_250 Hb_010531_050--Hb_000984_250 Hb_002326_070--Hb_080147_080 Hb_079733_010 Hb_079733_010 Hb_002326_070--Hb_079733_010 Hb_181975_010 Hb_181975_010 Hb_002326_070--Hb_181975_010 Hb_000834_240 Hb_000834_240 Hb_002326_070--Hb_000834_240 Hb_001907_100 Hb_001907_100 Hb_002326_070--Hb_001907_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39875 1.61418 0.733315 0.831628 0.405018 0.624965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0557443 0.0876787 0 0.353285 0.0891705

CAGE analysis