Hb_079733_010

Information

Type -
Description -
Location Contig79733: 213-2693
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079733_010 0.0 - - -
2 Hb_075449_020 0.1771956332 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
3 Hb_002027_380 0.1844615342 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
4 Hb_002326_070 0.1854632965 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
5 Hb_001493_010 0.1924877596 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
6 Hb_002316_050 0.1958143824 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000390_220 0.1961011145 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
8 Hb_001662_030 0.2035310669 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
9 Hb_046117_010 0.2076692405 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
10 Hb_006420_020 0.2087923389 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_179679_010 0.2111101087 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
12 Hb_001638_040 0.2154824287 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
13 Hb_080147_080 0.216607781 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_000987_130 0.2183852928 - - -
15 Hb_010831_020 0.2185922856 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_001189_130 0.2191937325 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
17 Hb_000540_120 0.2194641836 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
18 Hb_000331_280 0.2200743845 - - AMP dependent CoA ligase, putative [Ricinus communis]
19 Hb_012226_010 0.2206909019 - - PREDICTED: protein DGCR14 [Jatropha curcas]
20 Hb_025306_010 0.2209717217 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]

Gene co-expression network

sample Hb_079733_010 Hb_079733_010 Hb_075449_020 Hb_075449_020 Hb_079733_010--Hb_075449_020 Hb_002027_380 Hb_002027_380 Hb_079733_010--Hb_002027_380 Hb_002326_070 Hb_002326_070 Hb_079733_010--Hb_002326_070 Hb_001493_010 Hb_001493_010 Hb_079733_010--Hb_001493_010 Hb_002316_050 Hb_002316_050 Hb_079733_010--Hb_002316_050 Hb_000390_220 Hb_000390_220 Hb_079733_010--Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_075449_020--Hb_001662_030 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_003640_020 Hb_003640_020 Hb_002027_380--Hb_003640_020 Hb_130389_010 Hb_130389_010 Hb_002027_380--Hb_130389_010 Hb_000120_420 Hb_000120_420 Hb_002027_380--Hb_000120_420 Hb_000836_370 Hb_000836_370 Hb_002027_380--Hb_000836_370 Hb_005203_020 Hb_005203_020 Hb_002027_380--Hb_005203_020 Hb_001369_770 Hb_001369_770 Hb_002027_380--Hb_001369_770 Hb_080147_080 Hb_080147_080 Hb_002326_070--Hb_080147_080 Hb_181975_010 Hb_181975_010 Hb_002326_070--Hb_181975_010 Hb_005464_030 Hb_005464_030 Hb_002326_070--Hb_005464_030 Hb_000834_240 Hb_000834_240 Hb_002326_070--Hb_000834_240 Hb_001907_100 Hb_001907_100 Hb_002326_070--Hb_001907_100 Hb_010831_020 Hb_010831_020 Hb_001493_010--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_001493_010--Hb_000886_060 Hb_001493_010--Hb_181975_010 Hb_000003_390 Hb_000003_390 Hb_001493_010--Hb_000003_390 Hb_170487_010 Hb_170487_010 Hb_001493_010--Hb_170487_010 Hb_001052_040 Hb_001052_040 Hb_001493_010--Hb_001052_040 Hb_001638_040 Hb_001638_040 Hb_002316_050--Hb_001638_040 Hb_000265_250 Hb_000265_250 Hb_002316_050--Hb_000265_250 Hb_003633_140 Hb_003633_140 Hb_002316_050--Hb_003633_140 Hb_000808_070 Hb_000808_070 Hb_002316_050--Hb_000808_070 Hb_018133_030 Hb_018133_030 Hb_002316_050--Hb_018133_030 Hb_002316_050--Hb_000540_120 Hb_000390_220--Hb_001662_030 Hb_001189_130 Hb_001189_130 Hb_000390_220--Hb_001189_130 Hb_000390_220--Hb_025306_010 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10335 7.72529 1.17355 2.76165 3.37324 1.99002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60451 0.948555 0 0.735667 0

CAGE analysis