Hb_003640_020

Information

Type -
Description -
Location Contig3640: 5662-14817
Sequence    

Annotation

kegg
ID rcu:RCOM_1437420
description pelota, putative
nr
ID XP_002512614.1
description pelota, putative [Ricinus communis]
swissprot
ID Q9ZT87
description Protein PELOTA 1 OS=Arabidopsis thaliana GN=PEL1 PE=2 SV=1
trembl
ID B9RFU5
description Protein pelota homolog OS=Ricinus communis GN=RCOM_1437420 PE=3 SV=1
Gene Ontology
ID GO:0016787
description protein pelota 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37467: 13354-13497 , PASA_asmbl_37468: 13591-13695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003640_020 0.0 - - pelota, putative [Ricinus communis]
2 Hb_056987_010 0.0938079645 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
3 Hb_002027_380 0.1074947686 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
4 Hb_073171_090 0.1256467276 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
5 Hb_085364_010 0.1266768273 - - PREDICTED: nicalin-1-like [Populus euphratica]
6 Hb_167234_010 0.1279847397 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
7 Hb_005694_010 0.1280259541 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
8 Hb_012799_140 0.1289151737 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
9 Hb_000264_080 0.1292951331 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
10 Hb_000418_010 0.1357120485 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
11 Hb_002666_080 0.1372010366 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002016_060 0.1374699903 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
13 Hb_000958_150 0.1383913056 - - Actin, putative [Ricinus communis]
14 Hb_000336_110 0.138397425 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
15 Hb_000282_030 0.1387830925 - - K(+) efflux antiporter 4 [Glycine soja]
16 Hb_007894_130 0.1392015141 - - hypothetical protein RCOM_0584960 [Ricinus communis]
17 Hb_000059_020 0.1398992659 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
18 Hb_000197_030 0.1404354561 - - hypothetical protein RCOM_1447500 [Ricinus communis]
19 Hb_002081_120 0.1424818631 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
20 Hb_000120_520 0.1427107657 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003640_020 Hb_003640_020 Hb_056987_010 Hb_056987_010 Hb_003640_020--Hb_056987_010 Hb_002027_380 Hb_002027_380 Hb_003640_020--Hb_002027_380 Hb_073171_090 Hb_073171_090 Hb_003640_020--Hb_073171_090 Hb_085364_010 Hb_085364_010 Hb_003640_020--Hb_085364_010 Hb_167234_010 Hb_167234_010 Hb_003640_020--Hb_167234_010 Hb_005694_010 Hb_005694_010 Hb_003640_020--Hb_005694_010 Hb_000958_150 Hb_000958_150 Hb_056987_010--Hb_000958_150 Hb_000264_080 Hb_000264_080 Hb_056987_010--Hb_000264_080 Hb_002284_170 Hb_002284_170 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_056987_010--Hb_073171_090 Hb_000302_170 Hb_000302_170 Hb_056987_010--Hb_000302_170 Hb_130389_010 Hb_130389_010 Hb_002027_380--Hb_130389_010 Hb_000120_420 Hb_000120_420 Hb_002027_380--Hb_000120_420 Hb_000836_370 Hb_000836_370 Hb_002027_380--Hb_000836_370 Hb_005203_020 Hb_005203_020 Hb_002027_380--Hb_005203_020 Hb_001369_770 Hb_001369_770 Hb_002027_380--Hb_001369_770 Hb_000059_200 Hb_000059_200 Hb_073171_090--Hb_000059_200 Hb_005322_050 Hb_005322_050 Hb_073171_090--Hb_005322_050 Hb_007163_060 Hb_007163_060 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_073171_090--Hb_000302_170 Hb_002311_140 Hb_002311_140 Hb_085364_010--Hb_002311_140 Hb_001484_100 Hb_001484_100 Hb_085364_010--Hb_001484_100 Hb_030545_030 Hb_030545_030 Hb_085364_010--Hb_030545_030 Hb_003078_030 Hb_003078_030 Hb_085364_010--Hb_003078_030 Hb_004526_010 Hb_004526_010 Hb_085364_010--Hb_004526_010 Hb_002812_010 Hb_002812_010 Hb_085364_010--Hb_002812_010 Hb_003211_010 Hb_003211_010 Hb_167234_010--Hb_003211_010 Hb_118026_010 Hb_118026_010 Hb_167234_010--Hb_118026_010 Hb_030736_070 Hb_030736_070 Hb_167234_010--Hb_030736_070 Hb_167234_010--Hb_056987_010 Hb_004586_280 Hb_004586_280 Hb_167234_010--Hb_004586_280 Hb_001055_030 Hb_001055_030 Hb_167234_010--Hb_001055_030 Hb_000331_280 Hb_000331_280 Hb_005694_010--Hb_000331_280 Hb_027760_070 Hb_027760_070 Hb_005694_010--Hb_027760_070 Hb_000418_010 Hb_000418_010 Hb_005694_010--Hb_000418_010 Hb_000245_080 Hb_000245_080 Hb_005694_010--Hb_000245_080 Hb_000457_140 Hb_000457_140 Hb_005694_010--Hb_000457_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09277 7.92697 3.91452 5.61274 3.54023 3.56355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94804 1.67614 0.354831 3.89199 0.973827

CAGE analysis